Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   SUT_RS08615 Genome accession   NZ_AP025331
Coordinates   1818453..1820240 (-) Length   595 a.a.
NCBI ID   WP_156011002.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-183     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1813453..1825240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUT_RS08595 (GUT183_16650) - 1814253..1815155 (-) 903 WP_024531884.1 ABC transporter permease -
  SUT_RS08600 (GUT183_16660) opp4B 1815166..1816122 (-) 957 WP_024531883.1 oligopeptide ABC transporter permease -
  SUT_RS08605 (GUT183_16670) - 1816124..1817101 (-) 978 WP_050579600.1 ATP-binding cassette domain-containing protein -
  SUT_RS08610 (GUT183_16680) - 1817070..1818068 (-) 999 WP_024531881.1 ABC transporter ATP-binding protein -
  SUT_RS08615 (GUT183_16690) oppA 1818453..1820240 (-) 1788 WP_156011002.1 oligopeptide ABC transporter substrate-binding protein Regulator
  SUT_RS08620 (GUT183_16700) pbp3 1820451..1821692 (+) 1242 WP_155995780.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SUT_RS08625 (GUT183_16710) sufB 1821926..1823341 (-) 1416 WP_120172170.1 Fe-S cluster assembly protein SufB -
  SUT_RS08630 (GUT183_16720) sufU 1823515..1823955 (-) 441 WP_120172171.1 Fe-S cluster assembly sulfur transfer protein SufU -
  SUT_RS08635 (GUT183_16730) - 1823942..1825168 (-) 1227 WP_155962433.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65655.03 Da        Isoelectric Point: 4.9813

>NTDB_id=91149 SUT_RS08615 WP_156011002.1 1818453..1820240(-) (oppA) [Streptococcus ruminantium strain GUT-183]
MKKTTKLFALAGVTLLSVAALSACGSKKSNTAKQDLSFPSEVKQEGTAVAGAQLKVAWVSATTSTGLLIDELTSNTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVEGKKVKISLTGKDYKWSDGQPFTINDYIFTIKAMASKDYTGVRFDDRFLN
IVGMEEFVAGKASDISGIKKIDDHTVELSVKEVFPSMMHAGGKLPALVQPEHIYKNIPVKDWESSEYSRTAKIVGMGPWK
IKEIVNGESITYVPNEHYFKGAPKTSSMKVDIVSPDTIVAEMKAGNYDIADMPSDQVDSYKGLSNLNIVGSLDSSYEYIS
FNLGKYDNDQSKNVMDENAKMNDVKLRQAIAYAIDTKTAGEKLYHGLYHPAKSLIISFFGDLHDSELEGYTYNPEKAKKL
LDEAGYKDVDGDGIREGKDGKPFKISFAARKRTEANEALMQQYLAWWKEVGLNVELYTGRTIEGNTFYEMIKANDANIDM
YAAGWSTGYDPNPTGLWGPIAKFNMSRFVSDENTKLLEAFSSADSFDEKKNLENYKAWQKYAAEQAFAIPTFESEVLVAL
NKRVKNYDTKLGSASGNGIAYENIELLADKGEAAK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=91149 SUT_RS08615 WP_156011002.1 1818453..1820240(-) (oppA) [Streptococcus ruminantium strain GUT-183]
ATGAAGAAGACAACGAAACTTTTTGCACTTGCTGGTGTGACTCTCCTCTCAGTAGCGGCTCTTTCAGCATGTGGTTCTAA
GAAATCGAATACTGCAAAGCAAGATTTGTCATTCCCATCTGAAGTAAAACAAGAGGGAACTGCTGTTGCGGGTGCTCAAC
TGAAGGTTGCTTGGGTCTCAGCTACAACTTCAACAGGTCTTTTGATTGACGAATTGACTTCAAATACCACTGACTCAACA
TTCGGTGGCATGGTTGATATTTCAATGTTTGGCTATGATGGTGACCGCAAGTTAGACGATTCAGGTCTTGCTAAGGCTGA
GTTTGATGTGGAAGGTAAAAAAGTAAAGATTAGCTTGACAGGTAAAGACTACAAGTGGTCTGATGGTCAACCGTTTACTA
TCAATGACTATATCTTCACCATCAAGGCAATGGCAAGCAAAGACTATACCGGTGTTCGTTTTGACGATAGATTTTTGAAT
ATTGTTGGTATGGAAGAGTTTGTTGCTGGAAAAGCTTCTGACATCTCTGGTATTAAGAAAATTGACGACCATACAGTGGA
ACTATCCGTAAAAGAAGTATTCCCGTCAATGATGCATGCTGGTGGTAAATTGCCTGCCCTCGTACAACCTGAACACATCT
ACAAAAACATTCCGGTCAAAGACTGGGAGAGCAGTGAGTACTCACGTACAGCTAAGATTGTAGGTATGGGACCTTGGAAG
ATCAAGGAAATCGTTAACGGTGAGTCTATCACATACGTTCCAAATGAGCATTACTTCAAGGGTGCGCCGAAAACAAGCTC
GATGAAGGTGGATATTGTGTCACCTGATACAATTGTTGCTGAGATGAAGGCTGGTAACTACGACATTGCGGATATGCCAT
CAGATCAGGTGGATTCGTATAAAGGCTTATCTAACCTTAATATTGTCGGTAGTCTTGACTCAAGTTATGAATATATCTCC
TTTAATCTTGGTAAATATGATAACGATCAGTCCAAAAATGTGATGGACGAAAATGCTAAGATGAATGATGTGAAGCTTCG
CCAAGCGATTGCTTATGCAATTGATACGAAGACAGCGGGTGAAAAATTGTACCACGGTCTATACCATCCAGCTAAGTCAT
TGATTATCTCCTTCTTCGGTGATCTTCATGATTCAGAATTGGAAGGCTACACTTACAATCCAGAAAAAGCGAAGAAACTC
TTGGATGAAGCTGGTTATAAGGATGTAGACGGAGATGGTATCCGCGAAGGTAAAGATGGTAAACCATTCAAGATTTCGTT
CGCAGCTCGTAAGCGTACAGAAGCTAACGAAGCACTTATGCAGCAGTACCTTGCTTGGTGGAAAGAAGTTGGCTTGAATG
TTGAGCTGTACACAGGGCGTACAATTGAAGGTAATACATTCTATGAAATGATTAAGGCGAATGATGCAAACATTGATATG
TATGCTGCCGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTCTTTGGGGACCAATTGCGAAGTTCAACATGTCACG
CTTTGTTTCTGATGAAAATACTAAGTTATTAGAAGCGTTTAGCTCGGCAGACTCATTTGATGAGAAGAAAAACCTTGAAA
ACTACAAGGCATGGCAAAAATATGCTGCTGAGCAAGCATTTGCTATTCCAACATTCGAGTCGGAAGTCTTGGTTGCTCTC
AACAAGCGTGTGAAGAACTATGATACTAAACTTGGATCAGCATCAGGAAATGGTATTGCTTATGAAAATATCGAACTGCT
TGCGGACAAGGGTGAAGCTGCGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(122-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

83.389

100

0.835

Multiple sequence alignment