Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   U0449_RS02845 Genome accession   NZ_CP139862
Coordinates   562582..563313 (-) Length   243 a.a.
NCBI ID   WP_001866897.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 05H0020-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 557582..568313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0449_RS02815 blpC 558129..558257 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  U0449_RS02820 - 558328..559668 (-) 1341 WP_001017646.1 sensor histidine kinase -
  U0449_RS02825 comE/blpR 559682..560419 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  U0449_RS02830 - 560433..560762 (-) 330 WP_050218846.1 LytTR family DNA-binding domain-containing protein -
  U0449_RS02835 - 561039..561368 (+) 330 WP_000132572.1 hypothetical protein -
  U0449_RS02840 - 561536..562585 (-) 1050 WP_001866896.1 ABC transporter permease -
  U0449_RS02845 pptA 562582..563313 (-) 732 WP_001866897.1 ABC transporter ATP-binding protein Regulator
  U0449_RS02850 - 563381..563791 (+) 411 WP_001278301.1 HIT family protein -
  U0449_RS02855 - 563801..564088 (+) 288 WP_000777760.1 hypothetical protein -
  U0449_RS02860 - 564250..564498 (+) 249 WP_138027179.1 hypothetical protein -
  U0449_RS02865 dnaJ 564468..565604 (-) 1137 WP_001066301.1 molecular chaperone DnaJ -
  U0449_RS02870 - 566006..566362 (-) 357 WP_000114422.1 hypothetical protein -
  U0449_RS02875 dnaK 566364..568187 (-) 1824 WP_000034662.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27030.52 Da        Isoelectric Point: 4.7737

>NTDB_id=911468 U0449_RS02845 WP_001866897.1 562582..563313(-) (pptA) [Streptococcus pneumoniae strain 05H0020-2]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTMQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=911468 U0449_RS02845 WP_001866897.1 562582..563313(-) (pptA) [Streptococcus pneumoniae strain 05H0020-2]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTATGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTAGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712