Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SUT_RS05105 Genome accession   NZ_AP025331
Coordinates   1054141..1055367 (-) Length   408 a.a.
NCBI ID   WP_155964150.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-183     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1049141..1060367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUT_RS05080 (GUT183_09680) - 1049460..1049678 (-) 219 WP_024532717.1 hypothetical protein -
  SUT_RS05085 (GUT183_09690) - 1049748..1050683 (-) 936 WP_237373665.1 excalibur calcium-binding domain-containing protein -
  SUT_RS05090 (GUT183_09700) - 1051195..1051377 (+) 183 WP_120171717.1 4-oxalocrotonate tautomerase -
  SUT_RS05095 (GUT183_09710) lepA 1051451..1053283 (-) 1833 WP_024532033.1 translation elongation factor 4 -
  SUT_RS05100 (GUT183_09720) yihA 1053494..1054081 (-) 588 WP_024532032.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SUT_RS05105 (GUT183_09730) clpX 1054141..1055367 (-) 1227 WP_155964150.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SUT_RS05110 (GUT183_09740) - 1055567..1056079 (-) 513 WP_155972981.1 dihydrofolate reductase -
  SUT_RS05115 (GUT183_09750) - 1056491..1057330 (-) 840 WP_024532029.1 thymidylate synthase -
  SUT_RS05120 (GUT183_09760) - 1057382..1057579 (-) 198 WP_237373666.1 hypothetical protein -
  SUT_RS05125 - 1057592..1057870 (-) 279 WP_024532027.1 hypothetical protein -
  SUT_RS05130 (GUT183_09770) - 1057994..1058953 (-) 960 WP_120171720.1 ROK family glucokinase -
  SUT_RS05135 (GUT183_09780) - 1059156..1059491 (-) 336 WP_024532025.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45396.91 Da        Isoelectric Point: 4.6108

>NTDB_id=91141 SUT_RS05105 WP_155964150.1 1054141..1055367(-) (clpX) [Streptococcus ruminantium strain GUT-183]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDDNDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDVQKFGIIPELIGRLPVFAALDQLTTEDLIRIL
TEPKNALVKQYQTLLSYDDVELEFDEDALEEIAKKAIERKTGARGLRSIIEETMLDVMFEVPGQDEVKRVRVTKAAVNGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=91141 SUT_RS05105 WP_155964150.1 1054141..1055367(-) (clpX) [Streptococcus ruminantium strain GUT-183]
ATGGCTGTTAAGCATACACATGAGCTTATTTACTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTCAAAAAAATTATTGC
CGGAAACAATGTATTTATCTGTAATGAATGTGTCGAATTAGCACAAGAAATCATTCGTGAGGAATTGGCAGAAGAAGTTC
TAACAGACTTGGCTGATACGCCAAAACCACAGGAATTATTAAATATCCTAAACAACTATGTCATCGGACAAGACCGGGCG
AAACGTGCGCTGGCAGTGGCGGTTTATAACCACTATAAGCGAATCAATTTTCAAGACAGTCGTGATGATAATGATGTTGA
TTTACAAAAATCAAATATCCTCATGATTGGACCAACTGGATCTGGTAAAACCTTCTTAGCACAGACTCTCGCTAAAAGTT
TGAATGTGCCATTTGCGATTGCAGATGCCACAGCCTTGACAGAAGCAGGTTATGTTGGTGAGGATGTAGAAAATATCCTT
CTCAAACTCTTGCAGGCGGCAGATTTCAATATTGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAACGTGTCCATTACGCGGGATGTATCTGGTGAAGGTGTTCAGCAGGCTCTCCTAAAAATTATCG
AGGGGACAGTTGCTAGCGTACCACCACAAGGAGGACGTAAACATCCAAACCAAGAGATGATCCATGTAGACACCAAGAAC
ATCCTCTTCATCGTAGGTGGTGCTTTTGATGGTATTGAGGAAATTGTTAAACAACGTCTCGGCGAAAAAATTATTGGATT
TGGTCAGAATAATCGTGCCATTGATGAAAAAGAATCCTACATGCAACATATTATTGCTGATGATGTCCAAAAATTTGGTA
TCATTCCAGAATTGATTGGTCGGTTACCAGTTTTTGCAGCTCTGGATCAACTGACAACAGAGGATTTGATTCGCATTCTG
ACTGAACCTAAAAATGCTCTTGTTAAGCAATACCAAACGCTCCTTTCGTACGATGATGTGGAATTAGAATTTGACGAGGA
TGCCTTGGAGGAAATTGCTAAAAAAGCAATTGAGCGTAAAACAGGTGCTCGTGGTCTTCGCTCCATTATTGAGGAAACCA
TGCTGGATGTCATGTTTGAAGTGCCGGGTCAAGATGAGGTTAAGCGTGTTCGAGTAACCAAAGCTGCAGTAAATGGCAAG
GAAAAGCCACTACTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.96

98.529

0.571

Multiple sequence alignment