Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   U0447_RS00560 Genome accession   NZ_CP139861
Coordinates   104165..104974 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 99165..109974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS00540 - 101499..102485 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  U0447_RS00545 - 102786..103529 (-) 744 Protein_105 potassium channel family protein -
  U0447_RS00550 - 103576..103830 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  U0447_RS00555 relB 103832..104074 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  U0447_RS00560 vicX 104165..104974 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  U0447_RS00565 micB 104976..106325 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  U0447_RS00570 micA 106318..107022 (-) 705 WP_000722076.1 response regulator YycF Regulator
  U0447_RS00575 mutY 107078..108253 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -
  U0447_RS00580 - 108350..108475 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=911377 U0447_RS00560 WP_001289493.1 104165..104974(-) (vicX) [Streptococcus pneumoniae strain 16H2017-2]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=911377 U0447_RS00560 WP_001289493.1 104165..104974(-) (vicX) [Streptococcus pneumoniae strain 16H2017-2]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773