Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   U0448_RS07695 Genome accession   NZ_CP139860
Coordinates   1502700..1503431 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21011     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1497700..1508431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0448_RS07670 - 1499508..1499861 (+) 354 WP_000115730.1 hypothetical protein -
  U0448_RS07675 dnaJ 1500066..1501202 (+) 1137 WP_081571004.1 molecular chaperone DnaJ -
  U0448_RS07680 - 1501524..1501763 (-) 240 WP_001813906.1 hypothetical protein -
  U0448_RS07685 - 1501925..1502212 (-) 288 WP_000777760.1 hypothetical protein -
  U0448_RS07690 - 1502222..1502632 (-) 411 WP_001278301.1 HIT family protein -
  U0448_RS07695 pptA 1502700..1503431 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  U0448_RS07700 - 1503428..1504477 (+) 1050 WP_000653752.1 ABC transporter permease -
  U0448_RS07705 - 1504645..1504974 (-) 330 WP_000132572.1 hypothetical protein -
  U0448_RS07710 - 1505250..1505588 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  U0448_RS07715 comE/blpR 1505593..1506330 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  U0448_RS07720 - 1506344..1507684 (+) 1341 WP_050258907.1 sensor histidine kinase -
  U0448_RS07725 blpC 1507712..1507885 (-) 174 WP_050258908.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=911362 U0448_RS07695 WP_000889923.1 1502700..1503431(+) (pptA) [Streptococcus pneumoniae strain 21011]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=911362 U0448_RS07695 WP_000889923.1 1502700..1503431(+) (pptA) [Streptococcus pneumoniae strain 21011]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708