Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   U0448_RS05360 Genome accession   NZ_CP139860
Coordinates   1049997..1050755 (+) Length   252 a.a.
NCBI ID   WP_000410385.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21011     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044997..1055755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0448_RS05330 comE 1045594..1046346 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  U0448_RS05335 comD/comD2 1046343..1047668 (-) 1326 WP_001842237.1 competence system sensor histidine kinase ComD Regulator
  U0448_RS05340 comC/comC2 1047689..1047814 (-) 126 WP_000799686.1 competence-stimulating peptide ComC Regulator
  U0448_RS05350 rlmH 1048096..1048575 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  U0448_RS05355 htrA 1048758..1049939 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  U0448_RS05360 spo0J 1049997..1050755 (+) 759 WP_000410385.1 ParB/RepB/Spo0J family partition protein Regulator
  U0448_RS05365 dnaA 1050968..1052329 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  U0448_RS05370 dnaN 1052488..1053624 (+) 1137 WP_000581163.1 DNA polymerase III subunit beta -
  U0448_RS05375 - 1053689..1053883 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  U0448_RS05380 ychF 1053967..1055082 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  U0448_RS05385 pth 1055153..1055722 (+) 570 WP_000163930.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29152.56 Da        Isoelectric Point: 9.5711

>NTDB_id=911351 U0448_RS05360 WP_000410385.1 1049997..1050755(+) (spo0J) [Streptococcus pneumoniae strain 21011]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVKKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=911351 U0448_RS05360 WP_000410385.1 1049997..1050755(+) (spo0J) [Streptococcus pneumoniae strain 21011]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
GCTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAAAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTTTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
ATTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508