Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   U0542_RS18440 Genome accession   NZ_CP139831
Coordinates   3678314..3678694 (+) Length   126 a.a.
NCBI ID   WP_000836914.1    Uniprot ID   A0A098SJS3
Organism   Acinetobacter baumannii strain Nord12-3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3673314..3683694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0542_RS18410 (U0542_18410) kdsB 3674217..3674978 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U0542_RS18415 (U0542_18415) - 3674990..3675970 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  U0542_RS18420 (U0542_18420) - 3675982..3676323 (+) 342 WP_001183027.1 PilZ domain-containing protein -
  U0542_RS18425 (U0542_18425) - 3676341..3677114 (+) 774 WP_000497300.1 TatD family hydrolase -
  U0542_RS18430 (U0542_18430) - 3677152..3677760 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  U0542_RS18435 (U0542_18435) - 3677770..3678324 (+) 555 WP_000841373.1 type II secretion system protein -
  U0542_RS18440 (U0542_18440) xcpV 3678314..3678694 (+) 381 WP_000836914.1 type II secretion system minor pseudopilin GspI Machinery gene
  U0542_RS18445 (U0542_18445) xcpW 3678694..3679395 (+) 702 WP_000594579.1 type II secretion system minor pseudopilin GspJ Machinery gene
  U0542_RS18450 (U0542_18450) gspK 3679395..3680354 (+) 960 WP_072292244.1 type II secretion system minor pseudopilin GspK -
  U0542_RS18455 (U0542_18455) - 3680584..3681180 (+) 597 WP_000908449.1 6-carboxytetrahydropterin synthase -
  U0542_RS18460 (U0542_18460) ung 3681231..3681944 (+) 714 WP_001177527.1 uracil-DNA glycosylase -
  U0542_RS18465 (U0542_18465) - 3681941..3683065 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  U0542_RS18470 (U0542_18470) tadA 3683072..3683574 (+) 503 Protein_3442 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14074.34 Da        Isoelectric Point: 10.0341

>NTDB_id=911178 U0542_RS18440 WP_000836914.1 3678314..3678694(+) (xcpV) [Acinetobacter baumannii strain Nord12-3]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=911178 U0542_RS18440 WP_000836914.1 3678314..3678694(+) (xcpV) [Acinetobacter baumannii strain Nord12-3]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098SJS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992