Detailed information NTG0911179

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: U0542_RS18445
• Genome accession: NZ_CP139831
• Coordinates: 3678694..3679395 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain Nord12-3
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3673694..3684395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0542_RS18410 (U0542_18410)	kdsB	3674217..3674978 (+)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
U0542_RS18415 (U0542_18415)	-	3674990..3675970 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
U0542_RS18420 (U0542_18420)	-	3675982..3676323 (+)	342	WP_001183027.1	PilZ domain-containing protein	-
U0542_RS18425 (U0542_18425)	-	3676341..3677114 (+)	774	WP_000497300.1	TatD family hydrolase	-
U0542_RS18430 (U0542_18430)	-	3677152..3677760 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
U0542_RS18435 (U0542_18435)	-	3677770..3678324 (+)	555	WP_000841373.1	type II secretion system protein	-
U0542_RS18440 (U0542_18440)	xcpV	3678314..3678694 (+)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
U0542_RS18445 (U0542_18445)	xcpW	3678694..3679395 (+)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
U0542_RS18450 (U0542_18450)	gspK	3679395..3680354 (+)	960	WP_072292244.1	type II secretion system minor pseudopilin GspK	-
U0542_RS18455 (U0542_18455)	-	3680584..3681180 (+)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
U0542_RS18460 (U0542_18460)	ung	3681231..3681944 (+)	714	WP_001177527.1	uracil-DNA glycosylase	-
U0542_RS18465 (U0542_18465)	-	3681941..3683065 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
U0542_RS18470 (U0542_18470)	tadA	3683072..3683574 (+)	503	Protein_3442	tRNA adenosine(34) deaminase TadA	-
U0542_RS18475 (U0542_18475)	-	3683644..3684087 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=911179 U0542_RS18445 WP_000594579.1 3678694..3679395(+) (xcpW) [Acinetobacter baumannii strain Nord12-3]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=911179 U0542_RS18445 WP_000594579.1 3678694..3679395(+) (xcpW) [Acinetobacter baumannii strain Nord12-3]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983