Detailed information NTG0911162

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U0542_RS12235
• Genome accession: NZ_CP139831
• Coordinates: 2364283..2365143 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152277.1
• Uniprot ID: A0A009HWK1
• Organism: Acinetobacter baumannii strain Nord12-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2359283..2370143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0542_RS12205 (U0542_12205)	-	2360372..2360698 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
U0542_RS12210 (U0542_12210)	rlmB	2360800..2361549 (+)	750	WP_001118150.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
U0542_RS12215 (U0542_12215)	-	2361585..2361749 (+)	165	Protein_2219	EamA/RhaT family transporter	-
U0542_RS12220 (U0542_12220)	-	2361822..2362912 (+)	1091	WP_085940413.1	IS4-like element ISAba1 family transposase	-
U0542_RS12225 (U0542_12225)	-	2362930..2363688 (+)	759	Protein_2221	DMT family transporter	-
U0542_RS12230 (U0542_12230)	coaE	2363685..2364281 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
U0542_RS12235 (U0542_12235)	pilD	2364283..2365143 (-)	861	WP_001152277.1	A24 family peptidase	Machinery gene
U0542_RS12240 (U0542_12240)	pilC	2365143..2366369 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
U0542_RS12245 (U0542_12245)	pilB	2366399..2368111 (-)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
U0542_RS12250 (U0542_12250)	tpiA	2368402..2369196 (+)	795	WP_000016931.1	triose-phosphate isomerase	-
U0542_RS12255 (U0542_12255)	secG	2369209..2369538 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32038.43 Da
• Isoelectric Point: 7.1041

>NTDB_id=911162 U0542_RS12235 WP_001152277.1 2364283..2365143(-) (pilD) [Acinetobacter baumannii strain Nord12-3]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=911162 U0542_RS12235 WP_001152277.1 2364283..2365143(-) (pilD) [Acinetobacter baumannii strain Nord12-3]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

3D structure

• AlphaFold DB: A0A009HWK1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441