Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   HX0037_RS16900 Genome accession   NZ_CP139782
Coordinates   3413089..3414159 (+) Length   356 a.a.
NCBI ID   WP_070082113.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3408089..3419159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS16870 - 3408564..3408809 (-) 246 WP_003153078.1 DUF2626 domain-containing protein -
  HX0037_RS16875 - 3409046..3409426 (+) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  HX0037_RS16885 - 3409632..3410462 (+) 831 WP_017418143.1 STAS domain-containing protein -
  HX0037_RS16890 - 3410500..3411801 (-) 1302 WP_094247732.1 hemolysin family protein -
  HX0037_RS16895 - 3411947..3412897 (+) 951 WP_071391609.1 magnesium transporter CorA family protein -
  HX0037_RS16900 comGA 3413089..3414159 (+) 1071 WP_070082113.1 competence type IV pilus ATPase ComGA Machinery gene
  HX0037_RS16905 comGB 3414146..3415183 (+) 1038 WP_063174751.1 competence type IV pilus assembly protein ComGB Machinery gene
  HX0037_RS16910 comGC 3415188..3415496 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  HX0037_RS16915 comGD 3415486..3415923 (+) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  HX0037_RS16920 comGE 3415907..3416221 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  HX0037_RS16925 comGF 3416235..3416630 (+) 396 WP_094247733.1 competence type IV pilus minor pilin ComGF -
  HX0037_RS16930 comGG 3416631..3417008 (+) 378 WP_094247734.1 competence type IV pilus minor pilin ComGG Machinery gene
  HX0037_RS16935 - 3417065..3417244 (+) 180 WP_003153093.1 YqzE family protein -
  HX0037_RS16940 - 3417284..3417613 (-) 330 WP_003153097.1 DUF3889 domain-containing protein -
  HX0037_RS16945 tapA 3417872..3418543 (+) 672 WP_070082109.1 amyloid fiber anchoring/assembly protein TapA -
  HX0037_RS16950 sipW 3418515..3419099 (+) 585 WP_012117977.1 signal peptidase I SipW -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40557.91 Da        Isoelectric Point: 9.5862

>NTDB_id=911001 HX0037_RS16900 WP_070082113.1 3413089..3414159(+) (comGA) [Bacillus amyloliquefaciens strain HX0037]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFREAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=911001 HX0037_RS16900 WP_070082113.1 3413089..3414159(+) (comGA) [Bacillus amyloliquefaciens strain HX0037]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAATGAGGCCTATACAGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCTTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGACCGACCGGATCTGGAAAAACGACCACCCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTCCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAC
ACAAGGGATGCTAAGGGCGCCATATACAGACTGCTGGAGTTTGGGGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATCGCTGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCGGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCGGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

81.742

100

0.817
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374