Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HX0037_RS01200 Genome accession   NZ_CP139782
Coordinates   349163..350062 (-) Length   299 a.a.
NCBI ID   WP_094246940.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 344163..355062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS01185 xerC 344547..345464 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  HX0037_RS01190 trmFO 345534..346841 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HX0037_RS01195 topA 346906..348981 (-) 2076 WP_025649465.1 type I DNA topoisomerase -
  HX0037_RS01200 dprA 349163..350062 (-) 900 WP_094246940.1 DNA-processing protein DprA Machinery gene
  HX0037_RS01205 sucD 350128..351030 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  HX0037_RS01210 sucC 351059..352216 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  HX0037_RS01215 - 352391..352672 (-) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  HX0037_RS01220 - 352669..354372 (-) 1704 WP_094246941.1 glycosyl transferase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32878.95 Da        Isoelectric Point: 7.5073

>NTDB_id=910941 HX0037_RS01200 WP_094246940.1 349163..350062(-) (dprA) [Bacillus amyloliquefaciens strain HX0037]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEEIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=910941 HX0037_RS01200 WP_094246940.1 349163..350062(-) (dprA) [Bacillus amyloliquefaciens strain HX0037]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGAAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365