Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HX0037_RS02065 Genome accession   NZ_CP139782
Coordinates   567497..567781 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 562497..572781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS02045 ade 562603..564336 (-) 1734 WP_094246976.1 adenine deaminase -
  HX0037_RS02050 ktrC 564485..565150 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  HX0037_RS02055 - 565191..566018 (-) 828 WP_077722153.1 gamma-glutamylcyclotransferase -
  HX0037_RS02060 - 566020..567324 (-) 1305 WP_014304932.1 ATP-binding protein -
  HX0037_RS02065 abrB 567497..567781 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HX0037_RS02070 mreBH 568051..569058 (+) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  HX0037_RS02075 - 569130..569264 (+) 135 WP_003154559.1 protein YkpC -
  HX0037_RS02080 - 569365..570597 (+) 1233 WP_007409644.1 aminopeptidase -
  HX0037_RS02085 - 570626..571534 (-) 909 WP_017417693.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=910942 HX0037_RS02065 WP_024085249.1 567497..567781(-) (abrB) [Bacillus amyloliquefaciens strain HX0037]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=910942 HX0037_RS02065 WP_024085249.1 567497..567781(-) (abrB) [Bacillus amyloliquefaciens strain HX0037]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543