Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AABK36_RS01535 Genome accession   NZ_AP025305
Coordinates   401967..403361 (+) Length   464 a.a.
NCBI ID   WP_309937266.1    Uniprot ID   A0AAE3XKR0
Organism   Aureibacter tunicatorum strain NBRC 107587     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 396967..408361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK36_RS01515 (AUTU_03080) polA 397586..400426 (+) 2841 WP_309937261.1 DNA polymerase I -
  AABK36_RS01520 (AUTU_03090) - 400469..401011 (-) 543 WP_309937262.1 transposase -
  AABK36_RS01525 (AUTU_03100) - 401088..401456 (+) 369 WP_309937263.1 hypothetical protein -
  AABK36_RS01530 (AUTU_03110) - 401469..401840 (+) 372 WP_309937264.1 hypothetical protein -
  AABK36_RS01535 (AUTU_03120) radA 401967..403361 (+) 1395 WP_309937266.1 DNA repair protein RadA Machinery gene
  AABK36_RS01540 (AUTU_03130) - 403454..403849 (+) 396 WP_309937267.1 Rid family detoxifying hydrolase -
  AABK36_RS01545 (AUTU_03140) - 403901..404377 (+) 477 WP_309937268.1 hypothetical protein -
  AABK36_RS01550 (AUTU_03150) - 404519..405655 (+) 1137 WP_309937269.1 cysteine desulfurase family protein -
  AABK36_RS01555 (AUTU_03180) - 406196..407758 (-) 1563 WP_309937271.1 family 10 glycosylhydrolase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50904.34 Da        Isoelectric Point: 7.6348

>NTDB_id=91076 AABK36_RS01535 WP_309937266.1 401967..403361(+) (radA) [Aureibacter tunicatorum strain NBRC 107587]
MAKAKIKTAYFCQNCGAESPKWLGKCPACGQWNTYVEEVVDSTPKSQTVAWTGEVKGSGSNNRAAKPLKIKEIEHQTEKR
FNSKDAELNRVLGGGVVPGALVLIGGEPGIGKSTLMLQVALKMNNKKVLYVSGEESQSQIKMRSDRMAHNSDNCYVLTEV
TTQKIFKQIELLKPEVLVIDSIQTLQSEYIDSSAGSVSQVKQTAAELMKFAKESAVPTFIIGHINKDGNIAGPKVLEHMV
DTVLQFEGDRHGSYRILRTTKNRFGSTSELGIYEMQHNGLREVSNPSEILLSQREEALSGVAIGATLEGNRPLLIEVQSL
VSAAAYGNPQRSSTGYDVRRMNMLLAVLEKRGGFRLGVQDVFLNIAGGIKIEDPAIDLAMCVSLISSYEEMNVPDKTCFA
AEVGLGGELRAVNHVESRISEAQKLGFEQIYLSKYALKGIDMSKYSISIRAYAKLYEVFQDLFG

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=91076 AABK36_RS01535 WP_309937266.1 401967..403361(+) (radA) [Aureibacter tunicatorum strain NBRC 107587]
ATGGCTAAAGCGAAGATAAAAACAGCATATTTCTGTCAAAATTGTGGAGCGGAATCTCCCAAATGGTTAGGCAAATGTCC
GGCATGTGGACAATGGAATACTTATGTGGAGGAAGTTGTGGATTCAACTCCTAAAAGCCAAACGGTTGCATGGACGGGAG
AAGTGAAAGGTTCCGGTTCGAATAATAGAGCCGCCAAGCCTTTGAAGATCAAAGAAATCGAACATCAGACCGAAAAACGA
TTTAATAGTAAAGATGCCGAGCTCAATCGCGTCCTTGGAGGTGGTGTAGTGCCTGGAGCCTTGGTACTGATTGGTGGAGA
ACCAGGCATTGGTAAGTCTACTTTGATGCTGCAAGTTGCTCTAAAGATGAACAACAAAAAAGTACTCTATGTCTCAGGAG
AAGAAAGCCAAAGCCAGATCAAGATGCGCTCGGATCGTATGGCGCATAATTCTGACAATTGTTATGTCTTGACTGAAGTA
ACGACGCAAAAGATCTTTAAGCAAATAGAATTATTGAAGCCTGAAGTATTGGTGATAGATTCCATACAGACGCTTCAATC
AGAATATATTGATTCATCAGCGGGAAGTGTGAGTCAGGTAAAGCAAACTGCTGCTGAGCTAATGAAGTTTGCGAAAGAAT
CCGCAGTGCCTACATTCATCATTGGCCACATCAATAAAGACGGAAATATCGCCGGACCAAAAGTATTGGAGCATATGGTG
GATACTGTATTGCAGTTTGAAGGAGATCGCCATGGCTCATATCGTATTTTGCGTACAACGAAGAACCGTTTTGGATCTAC
ATCTGAGCTGGGAATCTATGAGATGCAACATAATGGCTTGAGGGAAGTGTCGAATCCTTCTGAAATTTTGCTTTCGCAAC
GTGAGGAAGCTTTGAGCGGAGTTGCTATCGGCGCGACCTTGGAAGGGAATCGGCCTTTGTTGATTGAAGTGCAATCATTG
GTAAGCGCGGCGGCTTATGGCAATCCTCAGCGTAGCTCGACAGGCTATGACGTTCGCAGGATGAATATGCTGTTGGCAGT
TCTTGAAAAGCGTGGAGGATTCAGGCTTGGGGTGCAAGATGTGTTCCTGAATATCGCCGGAGGTATCAAGATAGAAGACC
CTGCTATTGATTTGGCTATGTGCGTGTCGCTGATCTCTTCTTATGAAGAAATGAATGTGCCGGATAAAACATGTTTTGCC
GCGGAGGTTGGCCTTGGAGGGGAATTGAGAGCTGTTAATCATGTGGAAAGCCGTATTTCGGAAGCTCAAAAGCTAGGTTT
TGAACAGATATATTTATCTAAGTATGCATTGAAGGGGATTGATATGTCCAAGTATAGCATCAGCATCAGGGCATATGCAA
AGTTGTATGAGGTGTTTCAAGATTTGTTTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-228)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(351-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.807

99.353

0.485
  radA Streptococcus pneumoniae Rx1

48.807

99.353

0.485
  radA Streptococcus pneumoniae D39

48.807

99.353

0.485
  radA Streptococcus pneumoniae TIGR4

48.807

99.353

0.485
  radA Streptococcus mitis NCTC 12261

48.807

99.353

0.485
  radA Bacillus subtilis subsp. subtilis str. 168

48.596

99.784

0.485
  radA Streptococcus mitis SK321

48.59

99.353

0.483

Multiple sequence alignment