Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ABNQ24_RS16970 Genome accession   NZ_CP158968
Coordinates   3525307..3526623 (-) Length   438 a.a.
NCBI ID   WP_011000296.1    Uniprot ID   Q8Y2K3
Organism   Ralstonia pseudosolanacearum strain EN1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3520307..3531623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNQ24_RS16945 (ABNQ24_16910) - 3521243..3522733 (+) 1491 WP_058907451.1 tyrosinase family protein -
  ABNQ24_RS16950 (ABNQ24_16915) - 3522780..3523256 (+) 477 WP_058907450.1 hypothetical protein -
  ABNQ24_RS16955 (ABNQ24_16920) - 3523398..3523958 (-) 561 WP_058907449.1 hypothetical protein -
  ABNQ24_RS16960 (ABNQ24_16925) - 3524058..3524573 (+) 516 WP_016724225.1 O-acetyl-ADP-ribose deacetylase -
  ABNQ24_RS16965 (ABNQ24_16930) - 3524677..3525228 (+) 552 WP_029240201.1 TlpA disulfide reductase family protein -
  ABNQ24_RS16970 (ABNQ24_16935) luxO 3525307..3526623 (-) 1317 WP_011000296.1 sigma-54 dependent transcriptional regulator Regulator
  ABNQ24_RS16975 (ABNQ24_16940) - 3526649..3528646 (-) 1998 WP_089190483.1 sensor histidine kinase -
  ABNQ24_RS16980 (ABNQ24_16945) - 3528750..3530036 (-) 1287 WP_089190484.1 dicarboxylate/amino acid:cation symporter -
  ABNQ24_RS16985 (ABNQ24_16950) - 3530452..3530778 (+) 327 WP_011000293.1 ferredoxin -
  ABNQ24_RS16990 (ABNQ24_16955) - 3530802..3531449 (+) 648 WP_011000292.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 47969.94 Da        Isoelectric Point: 6.0824

>NTDB_id=910539 ABNQ24_RS16970 WP_011000296.1 3525307..3526623(-) (luxO) [Ralstonia pseudosolanacearum strain EN1]
MSEGLNVLFIEDDPPVRQATAQSLELAGFQVQAYASAEEAVGRIDADFYGVVVSDLRLPGASGLDVLAHCQSFGTGIPVV
LVTGHGDITMAVQAMRDGAFDFIEKPFPAERLTETVRRAVERRALELENRALRRELAGPAAGTRIIGRSQAMASVRALID
NVAATDAPVLINGETGTGKELVARSLHTLSPRHDKPFIALNCGAVPEQIFESEMFGHEAGAFTGAGKRRIGKIEHASGGT
LFLDEIESMPLALQVKLLRVLQEGMLERLGSNASVRIDVRIVAAAKGDMEALIEAGGFRRDLYYRLNVVAIDLPPLRERR
EDIIPLFEHFLLEAAVRYQRPLPMLSERQRHELMQSNWPGNVRELRNAADRLVLGVGRTPVVSDAAEDGMPLKERVERYE
RTVIAETLARTGGSVHQAADILQVGRATLYDKIKRYGL

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=910539 ABNQ24_RS16970 WP_011000296.1 3525307..3526623(-) (luxO) [Ralstonia pseudosolanacearum strain EN1]
ATGTCCGAAGGCTTGAACGTTCTCTTCATCGAAGACGATCCGCCCGTCCGCCAGGCCACCGCGCAAAGCCTGGAGCTTGC
CGGCTTCCAGGTCCAGGCCTACGCCAGCGCCGAGGAGGCGGTCGGCCGGATCGACGCCGATTTCTACGGCGTGGTCGTCA
GCGACCTGCGCCTGCCGGGCGCCAGCGGGCTCGACGTGCTGGCGCATTGCCAGTCGTTCGGCACCGGCATTCCGGTGGTG
CTCGTGACCGGCCACGGCGATATCACGATGGCCGTGCAGGCGATGCGCGACGGCGCGTTCGATTTCATCGAGAAGCCGTT
CCCCGCCGAGCGCCTGACCGAGACCGTGCGCCGCGCCGTCGAGCGCCGCGCGCTGGAGCTGGAAAACCGCGCCCTGCGCC
GCGAGTTGGCGGGGCCGGCGGCGGGCACGCGCATCATCGGCCGCTCCCAGGCGATGGCCTCGGTGCGCGCGCTGATCGAC
AACGTGGCCGCCACCGACGCGCCGGTGCTCATCAACGGCGAGACCGGCACCGGCAAGGAACTGGTCGCTCGCAGCCTGCA
CACGCTGTCGCCGCGCCACGACAAGCCGTTCATCGCGCTGAACTGCGGCGCGGTGCCCGAGCAGATCTTCGAGAGCGAGA
TGTTCGGCCATGAGGCCGGCGCCTTCACCGGCGCGGGCAAGCGGCGCATCGGCAAGATCGAGCACGCCTCGGGCGGCACG
CTCTTCCTCGACGAGATCGAGAGCATGCCGCTGGCGCTGCAGGTCAAGCTGCTGCGCGTGCTGCAGGAGGGCATGCTCGA
GCGCCTGGGCTCCAACGCCTCGGTGCGCATCGACGTGCGCATCGTCGCCGCCGCCAAGGGCGACATGGAGGCGCTGATCG
AGGCCGGCGGCTTCCGGCGCGACCTGTACTATCGCCTGAACGTCGTCGCCATCGACCTGCCGCCGCTGCGCGAGCGCCGC
GAAGACATCATCCCGCTGTTCGAGCACTTCCTGCTGGAGGCCGCCGTGCGCTATCAGCGTCCGTTGCCGATGCTGTCCGA
GCGCCAACGGCACGAACTGATGCAATCGAACTGGCCCGGCAACGTGCGCGAGCTGCGCAATGCCGCCGATCGCCTGGTGC
TGGGCGTCGGCCGCACGCCCGTCGTCTCCGATGCGGCGGAAGACGGCATGCCGCTCAAGGAGCGGGTCGAGCGCTACGAG
CGCACGGTGATCGCGGAGACGCTGGCGCGCACCGGTGGCTCCGTCCACCAGGCCGCCGACATCCTGCAGGTCGGGCGCGC
GACGCTGTACGACAAGATCAAGCGCTACGGCCTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Bacterial regulatory protein, Fis family (HTH_8)

(397-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

38.626

96.347

0.372
  pilR Pseudomonas aeruginosa PAK

36.303

100

0.372