Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   SO588_RS06500 Genome accession   NZ_CP139637
Coordinates   1316016..1317287 (-) Length   423 a.a.
NCBI ID   WP_046026147.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain DX2034     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311016..1322287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO588_RS06495 - 1314261..1315982 (-) 1722 WP_003685216.1 proline--tRNA ligase -
  SO588_RS06500 eeP 1316016..1317287 (-) 1272 WP_046026147.1 RIP metalloprotease RseP Regulator
  SO588_RS06505 - 1317309..1318097 (-) 789 WP_003681950.1 phosphatidate cytidylyltransferase -
  SO588_RS06510 - 1318114..1318887 (-) 774 WP_102313648.1 isoprenyl transferase -
  SO588_RS06515 frr 1319014..1319574 (-) 561 WP_003685219.1 ribosome recycling factor -
  SO588_RS06520 pyrH 1319574..1320299 (-) 726 WP_046026149.1 UMP kinase -
  SO588_RS06525 tsf 1320380..1321258 (-) 879 WP_003681955.1 translation elongation factor Ts -
  SO588_RS06530 rpsB 1321349..1322128 (-) 780 WP_003681957.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45983.44 Da        Isoelectric Point: 6.8570

>NTDB_id=910368 SO588_RS06500 WP_046026147.1 1316016..1317287(-) (eeP) [Limosilactobacillus fermentum strain DX2034]
MIITIITFIIVFGILVLVHEFGHYYFAKRAGILVREFSIGMGPKVWWRRSNGTTYTIRILPLGGYVRLAGADEDEDELRP
GTPVTLQTNEEGKVTLINASEKETLLEGIPLRIVASDLEDKLIISGYENDDEETVKTYPVDHDATIVERDGTVVRIAPKD
VQFQSASLPARMMTNFAGPMNNFILSLLVFIILGFTLSGIPTNSNVLGGVTKNSVAAKAGLVSGDKITGVATTKVSTWND
ISQAISPNPGKKLAVTYQRDGKTYHTTVTPKAAKQGSQTVGMIGIREEEKFDPVARINYGWRQFITAGTLIFAVLGHMIT
HGFSLNDLGGPVAIYAGTSQATSLGINGILAFLAMLSINLGIVNLIPIPALDGGKLLLNIVEGIIRRPIPEKVEGILNLA
GFALLMILMVLVTYNDIQRYFIH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=910368 SO588_RS06500 WP_046026147.1 1316016..1317287(-) (eeP) [Limosilactobacillus fermentum strain DX2034]
TTGATCATCACCATCATTACTTTTATCATCGTCTTCGGAATCCTGGTGCTCGTTCACGAATTCGGCCACTACTACTTTGC
CAAGCGGGCCGGGATTTTAGTACGCGAGTTTTCGATTGGGATGGGGCCCAAGGTTTGGTGGCGGCGTTCAAACGGGACGA
CCTACACCATCCGGATCCTGCCGCTTGGGGGCTACGTCCGCCTGGCCGGGGCCGATGAAGATGAAGACGAACTCCGTCCC
GGGACGCCGGTGACCTTGCAAACCAATGAGGAAGGCAAGGTGACCCTGATTAACGCCAGCGAAAAGGAAACCCTGTTGGA
GGGGATTCCGCTGCGGATCGTTGCCAGCGACCTGGAGGATAAGTTAATCATCTCCGGGTACGAAAATGATGATGAAGAAA
CCGTCAAGACCTACCCGGTTGATCACGACGCGACGATCGTCGAACGGGACGGGACCGTGGTGCGGATCGCCCCCAAGGAC
GTTCAGTTCCAATCGGCCAGCTTACCGGCGCGGATGATGACCAACTTTGCCGGGCCAATGAACAACTTCATCTTGTCCCT
GCTGGTCTTCATCATCCTGGGCTTTACCCTGAGCGGGATCCCCACCAACTCCAACGTTTTGGGCGGGGTGACCAAGAATT
CGGTGGCTGCCAAGGCCGGCCTGGTGAGCGGCGATAAAATTACCGGGGTGGCGACGACCAAGGTCAGCACCTGGAACGAT
ATTTCCCAGGCAATTTCCCCTAACCCGGGGAAGAAGCTCGCCGTTACCTACCAGCGCGATGGCAAGACCTACCACACCAC
CGTGACGCCTAAGGCCGCCAAACAGGGGAGCCAAACGGTCGGGATGATCGGGATCAGAGAAGAGGAGAAGTTTGATCCGG
TCGCCCGCATTAACTACGGCTGGCGCCAATTTATCACCGCCGGCACCTTGATCTTTGCGGTGCTCGGCCACATGATTACG
CACGGCTTTAGCTTAAACGACCTGGGGGGGCCGGTGGCAATTTACGCTGGCACCTCGCAGGCCACCTCGTTAGGGATTAA
CGGCATCCTCGCCTTCTTGGCGATGCTGTCGATTAACCTAGGGATCGTTAACCTGATTCCGATCCCGGCCTTAGACGGGG
GGAAGCTCCTCTTAAACATTGTCGAAGGCATCATTCGCCGGCCAATTCCCGAAAAAGTGGAGGGGATTTTGAATTTGGCT
GGCTTTGCCCTCTTGATGATCCTGATGGTCCTTGTGACCTATAACGACATTCAACGCTACTTTATCCATTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(7-408)

PDZ domain (PDZ_2)

(209-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.113

100

0.482
  eeP Streptococcus thermophilus LMD-9

48.113

100

0.482