Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SO785_RS08675 Genome accession   NZ_CP139575
Coordinates   1793004..1793522 (-) Length   172 a.a.
NCBI ID   WP_011254001.1    Uniprot ID   -
Organism   Lactobacillus acidophilus strain ATCC 4356     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1788004..1798522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO785_RS08655 dnaB 1788651..1790045 (-) 1395 WP_003549341.1 replicative DNA helicase -
  SO785_RS08660 rplI 1790071..1790526 (-) 456 WP_003549343.1 50S ribosomal protein L9 -
  SO785_RS08665 - 1790539..1792560 (-) 2022 WP_003549345.1 DHH family phosphoesterase -
  SO785_RS08670 rpsR 1792739..1792975 (-) 237 WP_003549366.1 30S ribosomal protein S18 -
  SO785_RS08675 ssb 1793004..1793522 (-) 519 WP_011254001.1 single-stranded DNA-binding protein Machinery gene
  SO785_RS08680 rpsF 1793568..1793864 (-) 297 WP_003549370.1 30S ribosomal protein S6 -
  SO785_RS08685 gyrA 1794065..1796539 (-) 2475 WP_003549372.1 DNA gyrase subunit A -
  SO785_RS08690 gyrB 1796550..1798514 (-) 1965 WP_021873993.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18829.48 Da        Isoelectric Point: 4.7317

>NTDB_id=910273 SO785_RS08675 WP_011254001.1 1793004..1793522(-) (ssb) [Lactobacillus acidophilus strain ATCC 4356]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQSGGYTPNNGNINNQPANNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=910273 SO785_RS08675 WP_011254001.1 1793004..1793522(-) (ssb) [Lactobacillus acidophilus strain ATCC 4356]
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAGTGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGCTAATAATTTCC
AAAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.857

100

0.64
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.056

100

0.57