Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   SD437_RS17680 Genome accession   NZ_CP139565
Coordinates   3499032..3499721 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain NCCP     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3494032..3504721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS17645 - 3494230..3494712 (-) 483 WP_031379255.1 flagellar protein FlgN -
  SD437_RS17650 flgM 3494727..3494993 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SD437_RS17655 - 3495063..3495482 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  SD437_RS17660 comFC 3495556..3496245 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  SD437_RS17665 - 3496251..3496535 (-) 285 WP_003151389.1 competence protein ComFB -
  SD437_RS17670 comFA 3496593..3497978 (-) 1386 WP_104842867.1 DEAD/DEAH box helicase Machinery gene
  SD437_RS17675 - 3498086..3498934 (-) 849 WP_003151387.1 DegV family protein -
  SD437_RS17680 degU 3499032..3499721 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SD437_RS17685 degS 3499798..3500961 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  SD437_RS17690 - 3501184..3501831 (+) 648 WP_007614107.1 YigZ family protein -
  SD437_RS17695 - 3501836..3503029 (+) 1194 WP_151140083.1 LCP family protein -
  SD437_RS17700 - 3503129..3504205 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=910248 SD437_RS17680 WP_003219701.1 3499032..3499721(-) (degU) [Bacillus velezensis strain NCCP]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=910248 SD437_RS17680 WP_003219701.1 3499032..3499721(-) (degU) [Bacillus velezensis strain NCCP]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1