Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABJ85_RS05370 Genome accession   NZ_AP027854
Coordinates   1097609..1098346 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2017-19-1CC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1092609..1103346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ85_RS05340 (VEE77_10420) yfiL 1092767..1093132 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  AABJ85_RS05345 (VEE77_10430) aroF 1093342..1094412 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABJ85_RS05350 (VEE77_10440) tyrA 1094423..1095544 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABJ85_RS05355 (VEE77_10450) pheA 1095587..1096747 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABJ85_RS05360 pheL 1096846..1096893 (-) 48 WP_010723158.1 phe operon leader peptide -
  AABJ85_RS05365 (VEE77_10460) raiA 1096997..1097338 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABJ85_RS05370 (VEE77_10470) comL 1097609..1098346 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABJ85_RS05375 (VEE77_10480) rluD 1098481..1099461 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABJ85_RS05380 (VEE77_10490) yfiH 1099458..1100189 (+) 732 WP_001752929.1 purine nucleoside phosphorylase YfiH -
  AABJ85_RS05385 (VEE77_10500) clpC 1100319..1102892 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=91024 AABJ85_RS05370 WP_000197686.1 1097609..1098346(-) (comL) [Escherichia coli strain 2017-19-1CC]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=91024 AABJ85_RS05370 WP_000197686.1 1097609..1098346(-) (comL) [Escherichia coli strain 2017-19-1CC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment