Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   SD437_RS01850 Genome accession   NZ_CP139565
Coordinates   349177..349614 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain NCCP     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 344177..354614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS01820 - 345040..346242 (+) 1203 WP_014416870.1 GTP-binding protein -
  SD437_RS01825 - 346307..347443 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  SD437_RS01830 - 347458..347892 (+) 435 WP_014416871.1 RDD family protein -
  SD437_RS01835 - 347965..348285 (+) 321 WP_015388719.1 YckD family protein -
  SD437_RS01840 - 348499..348717 (+) 219 Protein_322 family 1 glycosylhydrolase -
  SD437_RS01845 nin/comJ 348758..349156 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  SD437_RS01850 nucA/comI 349177..349614 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SD437_RS01855 hxlB 349945..350502 (-) 558 WP_065180943.1 6-phospho-3-hexuloisomerase -
  SD437_RS01860 hxlA 350499..351134 (-) 636 WP_123117601.1 3-hexulose-6-phosphate synthase -
  SD437_RS01865 - 351366..351728 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=910188 SD437_RS01850 WP_003156588.1 349177..349614(-) (nucA/comI) [Bacillus velezensis strain NCCP]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=910188 SD437_RS01850 WP_003156588.1 349177..349614(-) (nucA/comI) [Bacillus velezensis strain NCCP]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641