Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   SD437_RS01845 Genome accession   NZ_CP139565
Coordinates   348758..349156 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain NCCP     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 343758..354156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS01820 - 345040..346242 (+) 1203 WP_014416870.1 GTP-binding protein -
  SD437_RS01825 - 346307..347443 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  SD437_RS01830 - 347458..347892 (+) 435 WP_014416871.1 RDD family protein -
  SD437_RS01835 - 347965..348285 (+) 321 WP_015388719.1 YckD family protein -
  SD437_RS01840 - 348499..348717 (+) 219 Protein_322 family 1 glycosylhydrolase -
  SD437_RS01845 nin/comJ 348758..349156 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  SD437_RS01850 nucA/comI 349177..349614 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SD437_RS01855 hxlB 349945..350502 (-) 558 WP_065180943.1 6-phospho-3-hexuloisomerase -
  SD437_RS01860 hxlA 350499..351134 (-) 636 WP_123117601.1 3-hexulose-6-phosphate synthase -
  SD437_RS01865 - 351366..351728 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=910187 SD437_RS01845 WP_007609299.1 348758..349156(-) (nin/comJ) [Bacillus velezensis strain NCCP]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=910187 SD437_RS01845 WP_007609299.1 348758..349156(-) (nin/comJ) [Bacillus velezensis strain NCCP]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758