Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   SD440_RS15910 Genome accession   NZ_CP139561
Coordinates   3034060..3034200 (-) Length   46 a.a.
NCBI ID   WP_003213123.1    Uniprot ID   A0A5K1N966
Organism   Bacillus altitudinis strain NCCP     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3029060..3039200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS15885 - 3029325..3029714 (-) 390 WP_025207905.1 hotdog fold thioesterase -
  SD440_RS15890 comA 3029738..3030379 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  SD440_RS15895 comP 3030460..3032772 (-) 2313 WP_171465713.1 ATP-binding protein Regulator
  SD440_RS15900 comX 3032830..3032997 (-) 168 WP_108611760.1 competence pheromone ComX -
  SD440_RS15905 - 3032994..3033908 (-) 915 WP_113747034.1 polyprenyl synthetase family protein -
  SD440_RS15910 degQ 3034060..3034200 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  SD440_RS15915 - 3034706..3035059 (+) 354 WP_017358939.1 hypothetical protein -
  SD440_RS15920 - 3035096..3036322 (-) 1227 WP_035701209.1 HDOD domain-containing protein -
  SD440_RS15925 - 3036463..3037932 (-) 1470 WP_007500472.1 nicotinate phosphoribosyltransferase -
  SD440_RS15930 - 3037950..3038501 (-) 552 WP_046526549.1 isochorismatase family cysteine hydrolase -
  SD440_RS15935 - 3038562..3038969 (-) 408 WP_041091828.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5677.42 Da        Isoelectric Point: 4.6828

>NTDB_id=910168 SD440_RS15910 WP_003213123.1 3034060..3034200(-) (degQ) [Bacillus altitudinis strain NCCP]
MEKYEIEELKQLLWKLENEIRETTASLHNINKSIDQYDKYEYVKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=910168 SD440_RS15910 WP_003213123.1 3034060..3034200(-) (degQ) [Bacillus altitudinis strain NCCP]
ATGGAAAAGTATGAAATCGAAGAACTTAAACAACTATTATGGAAACTTGAAAACGAAATTAGAGAAACAACGGCTTCTCT
TCATAACATTAACAAAAGCATTGATCAATACGACAAATATGAATATGTGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N966

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.696