Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SD440_RS15890 Genome accession   NZ_CP139561
Coordinates   3029738..3030379 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NCCP     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3024738..3035379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS15855 - 3025867..3026298 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  SD440_RS15860 - 3026298..3026639 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  SD440_RS15865 - 3026632..3028110 (+) 1479 WP_019744043.1 Na+/H+ antiporter subunit D -
  SD440_RS15870 - 3028117..3028596 (+) 480 WP_017358944.1 Na+/H+ antiporter subunit E -
  SD440_RS15875 - 3028596..3028877 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  SD440_RS15880 mnhG 3028861..3029235 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  SD440_RS15885 - 3029325..3029714 (-) 390 WP_025207905.1 hotdog fold thioesterase -
  SD440_RS15890 comA 3029738..3030379 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  SD440_RS15895 comP 3030460..3032772 (-) 2313 WP_171465713.1 ATP-binding protein Regulator
  SD440_RS15900 comX 3032830..3032997 (-) 168 WP_108611760.1 competence pheromone ComX -
  SD440_RS15905 - 3032994..3033908 (-) 915 WP_113747034.1 polyprenyl synthetase family protein -
  SD440_RS15910 degQ 3034060..3034200 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  SD440_RS15915 - 3034706..3035059 (+) 354 WP_017358939.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=910166 SD440_RS15890 WP_007500477.1 3029738..3030379(-) (comA) [Bacillus altitudinis strain NCCP]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=910166 SD440_RS15890 WP_007500477.1 3029738..3030379(-) (comA) [Bacillus altitudinis strain NCCP]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACGGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718