Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   SD440_RS12230 Genome accession   NZ_CP139561
Coordinates   2356591..2356926 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NCCP     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2351591..2361926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS12210 gcvT 2352067..2353164 (-) 1098 WP_250026314.1 glycine cleavage system aminomethyltransferase GcvT -
  SD440_RS12215 - 2353726..2355396 (+) 1671 WP_249476733.1 SNF2-related protein -
  SD440_RS12220 - 2355411..2356208 (+) 798 WP_171465575.1 YqhG family protein -
  SD440_RS12225 - 2356393..2356557 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  SD440_RS12230 sinR 2356591..2356926 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  SD440_RS12235 - 2356994..2357794 (-) 801 WP_008342195.1 TasA family protein -
  SD440_RS12240 - 2357853..2358425 (-) 573 WP_017357979.1 signal peptidase I -
  SD440_RS12245 tapA 2358475..2359002 (-) 528 WP_073413951.1 amyloid fiber anchoring/assembly protein TapA -
  SD440_RS12250 - 2359255..2359581 (+) 327 WP_056705243.1 DUF3889 domain-containing protein -
  SD440_RS12255 - 2359616..2359810 (-) 195 WP_008342191.1 YqzE family protein -
  SD440_RS12260 comGG 2359871..2360254 (-) 384 WP_035702776.1 competence type IV pilus minor pilin ComGG -
  SD440_RS12265 comGF 2360251..2360748 (-) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  SD440_RS12270 comGE 2360690..2361004 (-) 315 WP_017357984.1 competence type IV pilus minor pilin ComGE -
  SD440_RS12275 comGD 2360988..2361434 (-) 447 WP_017357985.1 competence type IV pilus minor pilin ComGD -
  SD440_RS12280 comGC 2361427..2361720 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=910154 SD440_RS12230 WP_017357978.1 2356591..2356926(+) (sinR) [Bacillus altitudinis strain NCCP]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=910154 SD440_RS12230 WP_017357978.1 2356591..2356926(+) (sinR) [Bacillus altitudinis strain NCCP]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928