Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABR758_RS17535 Genome accession   NZ_CP158447
Coordinates   3636275..3637936 (+) Length   553 a.a.
NCBI ID   WP_350346057.1    Uniprot ID   -
Organism   Escherichia coli strain CS6L     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3631275..3642936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR758_RS17515 (ABR758_17505) ypjD 3632443..3633234 (+) 792 WP_001338897.1 inner membrane protein YpjD -
  ABR758_RS17520 (ABR758_17510) yfjD 3633255..3634541 (+) 1287 WP_010723175.1 HlyC/CorC family transporter -
  ABR758_RS17525 (ABR758_17515) grpE 3634595..3635188 (-) 594 WP_001296310.1 nucleotide exchange factor GrpE -
  ABR758_RS17530 (ABR758_17520) nadK 3635311..3636189 (+) 879 WP_001059169.1 NAD(+) kinase -
  ABR758_RS17535 (ABR758_17525) recN 3636275..3637936 (+) 1662 WP_350346057.1 DNA repair protein RecN Machinery gene
  ABR758_RS17540 (ABR758_17530) bamE 3638085..3638426 (+) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  ABR758_RS17545 (ABR758_17535) yfjF 3638488..3638778 (-) 291 WP_001117840.1 RnfH family protein -
  ABR758_RS17550 (ABR758_17540) ratA 3638768..3639205 (-) 438 WP_001300750.1 type II toxin-antitoxin system toxin RatA -
  ABR758_RS17555 (ABR758_17545) smpB 3639376..3639858 (+) 483 WP_000162574.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61335.26 Da        Isoelectric Point: 5.1819

>NTDB_id=909822 ABR758_RS17535 WP_350346057.1 3636275..3637936(+) (recN) [Escherichia coli strain CS6L]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETANALHQQRQHYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHIESLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=909822 ABR758_RS17535 WP_350346057.1 3636275..3637936(+) (recN) [Escherichia coli strain CS6L]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAAT
AACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACA
TGGTGCGTACCGGCGCTGCTCGTGCCGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCGGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AATTACTCACCAAACCTGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTACTTCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGTGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGTGCTGCCCGTGC
GGAGCTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGATGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTAAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTGCGCCACTACTGCGATCGTCTGGACCTCG
ATCCTAACCGACTGTTTGAACTTGAACAGCGCATCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTAGAAACCGCGAACGCATTACACCAGCAACGCCAGCACTATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCACTCTCTATGCCGCATGGGCAGTTTACGATTGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGCGCCGATCGTATTGAATTTCGGGTAACCACCAACCCAGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCACGCATCGCATTGGCAATTCAGGTCATCACGGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGCCCAACAGCGGCAGTTGTTGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATAGAGTCGCTGGACAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGTGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

38.156

100

0.382
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365