Detailed information NTG0909493

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: SM121_RS06605
• Genome accession: NZ_CP139418
• Coordinates: 1356642..1357874 (+)
• Length: 410 a.a.
• NCBI ID: WP_003001797.1
• Uniprot ID: V8BGN3
• Organism: Streptococcus dentalis strain S1
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1351642..1362874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SM121_RS06600 (SM121_06600)	-	1355924..1356433 (+)	510	WP_151378851.1	dihydrofolate reductase	-
SM121_RS06605 (SM121_06605)	clpX	1356642..1357874 (+)	1233	WP_003001797.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
SM121_RS06610 (SM121_06610)	yihA	1357886..1358488 (+)	603	WP_003016353.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
SM121_RS06615 (SM121_06615)	-	1358638..1359342 (+)	705	WP_003001855.1	glucosaminidase domain-containing protein	-
SM121_RS06620 (SM121_06620)	-	1359510..1360307 (+)	798	WP_151378852.1	formate/nitrite transporter family protein	-
SM121_RS06625 (SM121_06625)	rplJ	1360542..1361042 (+)	501	WP_003001722.1	50S ribosomal protein L10	-
SM121_RS06630 (SM121_06630)	rplL	1361119..1361487 (+)	369	WP_320910689.1	50S ribosomal protein L7/L12	-
SM121_RS06635 (SM121_06635)	-	1361647..1362090 (+)	444	WP_155171909.1	hypothetical protein	-
SM121_RS06640 (SM121_06640)	-	1362243..1362686 (+)	444	WP_320910690.1	hypothetical protein	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45663.16 Da
• Isoelectric Point: 4.3940

>NTDB_id=909493 SM121_RS06605 WP_003001797.1 1356642..1357874(+) (clpX) [Streptococcus dentalis strain S1]
MPTNQNNDMMVYCSFCGKSQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREDETDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGKNNKAIDESSSYMQEIVAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKAIERKTGARGLRSIIEETMMDVMFEIPSQEDVKLVRITKEAVD
GTEKPILETA

Nucleotide

• Length: 1233 bp

>NTDB_id=909493 SM121_RS06605 WP_003001797.1 1356642..1357874(+) (clpX) [Streptococcus dentalis strain S1]
ATGCCAACGAATCAAAATAATGATATGATGGTTTATTGTTCATTTTGCGGAAAGAGTCAAGATGAAGTCCAAAAAATCAT
TGCAGGAAACAACGCGTTTATCTGTAATGAATGTGTCGAGTTAGCACAAGAAATTATCCGTGAGGAGCTAGCAGAAGAAG
TTCTTGCAGACCTTAGCGAAGTTCCAAAACCAATCGAATTGCTCAATATCTTGAACCACTATGTCATCGGTCAAGATCGT
GCCAAACGTGCTCTTGCTGTAGCGGTATACAACCACTACAAACGCATCAACTTCCACGATACGCGCGAAGATGAGACAGA
TGTTGAATTGCAAAAATCAAACATCCTCATGATTGGTCCTACTGGTTCAGGTAAGACTTTCTTGGCCCAAACCTTAGCAC
GTAGCTTGAATGTCCCATTTGCCATTGCAGATGCAACAGCCTTGACAGAAGCTGGTTATGTGGGTGAAGACGTTGAAAAT
ATTCTCTTGAAACTTCTTCAGGCAGCTGATTTCAACATCGAACGTGCTGAACGAGGCATTATTTATGTCGATGAAATTGA
TAAGATTGCTAAGAAAAGTGAAAATGTCTCTATCACACGTGACGTTTCTGGTGAAGGGGTACAACAAGCCCTCTTGAAGA
TCATCGAAGGAACCGTCGCTAGTGTCCCACCTCAAGGGGGACGTAAACATCCTCAACAAGAAATGATCCAAGTGGATACC
AAGAATATTCTCTTCATCGTAGGTGGAGCTTTTGACGGGATCGAAGAAATTGTTAAGCAACGTCTCGGTGAAAAAGTCAT
CGGTTTCGGTAAGAACAATAAAGCCATTGATGAATCAAGCTCTTACATGCAAGAAATCGTGGCAGAAGATATTCAAAAAT
TCGGGATTATCCCAGAATTGATCGGACGTCTTCCAGTCTTTGCTGCTCTTGAGCAATTGACAGTTGACGACCTTGTCCGT
ATCTTGAAAGAGCCACGCAATGCCTTGGTAAAACAATACCAAACCTTGCTCTCTTATGATAATGTTGAATTGGAATTCGA
TGATGAAGCTCTTCAAGAGATTGCCAATAAAGCTATCGAAAGAAAAACAGGAGCTCGTGGACTTCGCTCCATTATCGAAG
AAACGATGATGGATGTCATGTTTGAAATTCCAAGTCAAGAAGATGTCAAACTTGTTCGAATTACAAAAGAAGCTGTAGAT
GGAACTGAAAAACCAATTCTCGAAACAGCCTAG

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (313-390)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-306)

3D structure

• AlphaFold DB: V8BGN3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	86.341	100	0.863
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.711	98.049	0.566