Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SMG00_RS13925 Genome accession   NZ_CP139417
Coordinates   2963768..2965993 (-) Length   741 a.a.
NCBI ID   WP_320892915.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain H46     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2958768..2970993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMG00_RS13890 murB 2959158..2960177 (-) 1020 WP_320892913.1 UDP-N-acetylmuramate dehydrogenase -
  SMG00_RS13895 - 2960174..2960641 (-) 468 WP_125886266.1 low molecular weight protein-tyrosine-phosphatase -
  SMG00_RS13900 kdsB 2960643..2961407 (-) 765 WP_320892914.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SMG00_RS13905 - 2961404..2961589 (-) 186 WP_011913743.1 Trm112 family protein -
  SMG00_RS13910 lpxK 2961635..2962639 (-) 1005 WP_014597105.1 tetraacyldisaccharide 4'-kinase -
  SMG00_RS13915 - 2962639..2963067 (-) 429 WP_013983259.1 biopolymer transporter ExbD -
  SMG00_RS13920 - 2963064..2963696 (-) 633 WP_013983260.1 MotA/TolQ/ExbB proton channel family protein -
  SMG00_RS13925 comA 2963768..2965993 (-) 2226 WP_320892915.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SMG00_RS13930 - 2966138..2966653 (+) 516 WP_279640158.1 DUF2062 domain-containing protein -
  SMG00_RS13935 - 2966666..2967910 (-) 1245 WP_026006609.1 lipoprotein-releasing ABC transporter permease subunit -
  SMG00_RS13940 lolD 2967910..2968608 (-) 699 WP_320892916.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  SMG00_RS13945 - 2968616..2969863 (-) 1248 WP_041771782.1 lipoprotein-releasing ABC transporter permease subunit -
  SMG00_RS13950 - 2969896..2970531 (+) 636 WP_013983265.1 PilZ domain-containing protein -
  SMG00_RS13955 - 2970535..2970843 (+) 309 WP_320892918.1 phosphodiesterase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 81053.61 Da        Isoelectric Point: 9.6450

>NTDB_id=909443 SMG00_RS13925 WP_320892915.1 2963768..2965993(-) (comA) [Stutzerimonas stutzeri strain H46]
MRTWMLALAAGLVLPRFLPALPAQWFCAALAAVGLLLLLRHRWVAPGLFLLGLSWACYQSQSAIDDRLPASMDGRTFWIE
GRVVGLPSRIGNVVRFELDDIQSRHAGLPSKVRLSWYDGPLLQAGERWRLAARLKRPHGMVNPHAFDYEAWLLARRIGAT
GTIKAGERLTASTSSDGWRDQLRARLMAIPASDRQGAIAALVVGDDSGLSRGDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLARLGAWPRRLPWLPWACGLALSGALAYGWLAGFEVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLF
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWCWWMALTRAQWAATLGLLPLLLALGLPVSASGPLANLLAVPWVSLTVPF
ALLGTLLLPVAGVGEALLSVVGYSLALLFDVLAAIANWQPAWIAVGLPVWALALIGLGVLLLLLPAGIPLRSLGLLLLLP
LAFPPRVEVPDGRAQVWVLDVGQGLAVLVRTREHALLYDAGPKQGDFDTGERVVVPSLRTLGVTRLDLLLLSHADNDHSG
GADAVQRLLRVDRVVSGEPSRLAPDLGAEHCESGSSWQWNNVRFSLWQWQMARDSNQQSCVLQIEANGERILLTGDIDQA
AERAWLASEQRTPSHWLLLPHHGSRSSSSEPFLRSVASHAALISRSLHNAFGHPHPSVVERLEILDIRAYDTAVHGAIRI
ELGSFSPPWLQRSQRRFWREK

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=909443 SMG00_RS13925 WP_320892915.1 2963768..2965993(-) (comA) [Stutzerimonas stutzeri strain H46]
ATGCGCACATGGATGCTTGCGCTCGCCGCGGGTCTGGTCCTGCCACGCTTCCTTCCTGCCTTGCCCGCGCAGTGGTTCTG
TGCGGCGCTGGCGGCTGTCGGACTGCTGCTCCTGCTGCGTCACCGCTGGGTGGCGCCGGGCTTGTTTCTGCTGGGCTTGA
GCTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGCTTACCGGCGTCCATGGACGGTCGTACGTTCTGGATCGAG
GGACGGGTAGTGGGGTTGCCCAGCCGTATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATCCAATCGCGCCATGCCGG
GTTGCCATCGAAGGTGCGGCTGTCCTGGTATGACGGTCCGCTGCTGCAAGCCGGCGAGCGTTGGCGCCTGGCGGCGCGAC
TGAAGCGACCGCATGGCATGGTCAATCCCCACGCCTTCGATTACGAAGCCTGGTTGCTGGCGCGACGCATCGGCGCCACG
GGCACGATAAAGGCAGGCGAGCGCCTGACGGCGTCGACGTCAAGCGACGGATGGCGCGATCAGCTTCGGGCGCGGCTCAT
GGCCATTCCGGCATCCGATCGGCAGGGCGCCATCGCGGCACTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGGCGACT
GGCAGGTGTTGCAGGACACCGGCACCGTCCACCTGATGGTCATCTCCGGACAGCACATCGGCATGCTGGCGGGGCTGCTC
TATGGTCTGGTCGCATTGCTGGCTCGCCTGGGTGCGTGGCCGCGGCGGTTGCCCTGGTTGCCCTGGGCGTGCGGGCTGGC
GTTAAGCGGTGCGCTGGCCTATGGCTGGCTGGCCGGTTTCGAGGTACCGGTGCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGATTGCGCTTTCGCCATCTGGGTGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGTGTCCTGCTGTTC
GATCCCCTGGTCACATTGCAGCCCGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGGCG
GCTCGGCTCATGGTGCTGGTGGATGGCGCTGACCCGGGCGCAGTGGGCGGCCACCCTTGGTCTGCTTCCGCTGTTGCTGG
CCCTCGGACTGCCGGTAAGTGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTACCCTGGGTGAGTCTGACCGTGCCCTTT
GCGTTGCTCGGTACGCTCCTGCTGCCCGTGGCCGGGGTTGGCGAAGCGCTGCTGTCGGTGGTGGGCTATTCGCTGGCATT
GCTGTTCGACGTCCTGGCGGCGATAGCCAATTGGCAACCCGCCTGGATTGCGGTCGGCCTGCCCGTCTGGGCGCTGGCGT
TAATCGGGCTGGGCGTCCTGTTGCTGTTGCTGCCCGCGGGTATTCCGCTGCGTTCGCTGGGTTTGCTGCTGCTGTTGCCG
CTGGCGTTCCCGCCTCGTGTCGAGGTGCCAGACGGCCGGGCGCAGGTCTGGGTATTGGATGTGGGGCAGGGCCTGGCGGT
GCTTGTACGCACCCGCGAGCATGCACTGCTCTACGATGCCGGGCCGAAGCAGGGCGACTTCGATACGGGCGAGCGGGTGG
TCGTCCCTTCGCTCCGGACCCTTGGCGTGACTCGGTTGGACCTGCTGTTGCTGAGTCATGCCGATAATGATCATTCGGGC
GGTGCGGACGCGGTTCAGCGGTTGCTGAGGGTTGATCGGGTGGTCAGTGGCGAGCCGTCGCGCCTTGCGCCTGATCTGGG
CGCCGAACATTGCGAAAGCGGTAGCAGCTGGCAGTGGAACAATGTGCGCTTCAGTCTGTGGCAATGGCAGATGGCACGCG
ACAGCAATCAGCAGTCCTGCGTGCTGCAAATCGAGGCCAATGGTGAGCGGATCCTGCTCACCGGCGACATCGACCAGGCC
GCGGAGCGGGCATGGCTGGCAAGCGAACAGCGCACCCCATCGCACTGGCTGTTGCTGCCCCACCATGGCAGCCGCAGCTC
GTCGTCAGAACCGTTTCTGCGCAGCGTCGCCTCCCATGCCGCGCTGATCTCGCGCAGCCTGCACAATGCCTTCGGCCACC
CACACCCAAGCGTGGTCGAGCGGCTCGAGATCCTCGATATCCGGGCCTACGACACCGCCGTGCATGGCGCAATCCGCATC
GAGCTGGGAAGCTTTTCGCCTCCTTGGCTACAACGTTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-168)

Competence protein (Competence)

(201-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(500-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

67.227

96.356

0.648
  comA Ralstonia pseudosolanacearum GMI1000

36.905

100

0.377