Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NCY62_RS09825 Genome accession   NZ_CP139356
Coordinates   2069714..2070094 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain A45P     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064714..2075094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS09795 (NCY62_09830) tadA 2064718..2065221 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  NCY62_RS09800 (NCY62_09835) hibch 2065227..2066351 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  NCY62_RS09805 (NCY62_09840) ung 2066348..2067061 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  NCY62_RS09810 (NCY62_09845) - 2067115..2067711 (-) 597 WP_017386831.1 6-pyruvoyl trahydropterin synthase family protein -
  NCY62_RS09815 (NCY62_09850) gspK 2067939..2068898 (-) 960 WP_250733539.1 type II secretion system minor pseudopilin GspK -
  NCY62_RS09820 (NCY62_09855) xcpW 2068899..2069714 (-) 816 WP_057062344.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NCY62_RS09825 (NCY62_09860) xcpV 2069714..2070094 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  NCY62_RS09830 (NCY62_09865) - 2070084..2070638 (-) 555 WP_057062345.1 type II secretion system protein -
  NCY62_RS09835 (NCY62_09870) - 2070645..2071253 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  NCY62_RS09840 (NCY62_09875) ycfH 2071290..2072063 (-) 774 WP_250733538.1 TatD family hydrolase -
  NCY62_RS09845 (NCY62_09880) pilZ 2072081..2072422 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  NCY62_RS09850 (NCY62_09885) holB 2072433..2073413 (-) 981 WP_250733531.1 DNA polymerase III subunit delta' -
  NCY62_RS09855 (NCY62_09890) kdsB 2073427..2074188 (-) 762 WP_057062348.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=909076 NCY62_RS09825 WP_002121425.1 2069714..2070094(-) (xcpV) [Acinetobacter pittii strain A45P]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=909076 NCY62_RS09825 WP_002121425.1 2069714..2070094(-) (xcpV) [Acinetobacter pittii strain A45P]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACCAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTTGATTTGCAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937