Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NCY62_RS01680 Genome accession   NZ_CP139356
Coordinates   357829..358356 (+) Length   175 a.a.
NCBI ID   WP_005804532.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A45P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352829..363356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS01665 (NCY62_01675) pilM 355342..356400 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  NCY62_RS01670 (NCY62_01680) pilN 356400..357041 (+) 642 WP_250733506.1 PilN domain-containing protein Machinery gene
  NCY62_RS01675 (NCY62_01685) pilO 357038..357817 (+) 780 WP_005804531.1 type 4a pilus biogenesis protein PilO Machinery gene
  NCY62_RS01680 (NCY62_01690) pilP 357829..358356 (+) 528 WP_005804532.1 pilus assembly protein PilP Machinery gene
  NCY62_RS01685 (NCY62_01695) pilQ 358419..360584 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  NCY62_RS01690 (NCY62_01700) aroK 360596..361165 (+) 570 WP_002116987.1 shikimate kinase AroK -
  NCY62_RS01695 (NCY62_01705) aroB 361194..362276 (+) 1083 WP_005804533.1 3-dehydroquinate synthase -
  NCY62_RS01700 (NCY62_01710) - 362293..363162 (+) 870 WP_005804534.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19252.40 Da        Isoelectric Point: 9.7301

>NTDB_id=909058 NCY62_RS01680 WP_005804532.1 357829..358356(+) (pilP) [Acinetobacter pittii strain A45P]
MKLKKILLSLGIGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRASQPLESYALESLNMKGSMRNSRGQVMALIQTPDHQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=909058 NCY62_RS01680 WP_005804532.1 357829..358356(+) (pilP) [Acinetobacter pittii strain A45P]
ATGAAACTAAAGAAAATTTTACTTTCTCTGGGGATAGGCTTGGTTCTGGTTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCATCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGTGGGCAAGTCATGGCTCTGATCCAAACACCTGATCATCAAATTGAGCGAGTACAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATCTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

86.857

100

0.869
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714