Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NCY62_RS01670 Genome accession   NZ_CP139356
Coordinates   356400..357041 (+) Length   213 a.a.
NCBI ID   WP_250733506.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A45P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351400..362041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS01650 (NCY62_01660) - 351403..351735 (+) 333 WP_005804527.1 DUF7709 family protein -
  NCY62_RS01655 (NCY62_01665) rrmA 351738..352562 (+) 825 WP_005078486.1 putative RNA methyltransferase -
  NCY62_RS01660 (NCY62_01670) ponA 352619..355180 (-) 2562 WP_005804528.1 penicillin-binding protein PBP1a -
  NCY62_RS01665 (NCY62_01675) pilM 355342..356400 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  NCY62_RS01670 (NCY62_01680) pilN 356400..357041 (+) 642 WP_250733506.1 PilN domain-containing protein Machinery gene
  NCY62_RS01675 (NCY62_01685) pilO 357038..357817 (+) 780 WP_005804531.1 type 4a pilus biogenesis protein PilO Machinery gene
  NCY62_RS01680 (NCY62_01690) pilP 357829..358356 (+) 528 WP_005804532.1 pilus assembly protein PilP Machinery gene
  NCY62_RS01685 (NCY62_01695) pilQ 358419..360584 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  NCY62_RS01690 (NCY62_01700) aroK 360596..361165 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24011.52 Da        Isoelectric Point: 6.4553

>NTDB_id=909056 NCY62_RS01670 WP_250733506.1 356400..357041(+) (pilN) [Acinetobacter pittii strain A45P]
MATINLLPWRDGLREQRKKQFIILCFGVVILGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSIGTYKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=909056 NCY62_RS01670 WP_250733506.1 356400..357041(+) (pilN) [Acinetobacter pittii strain A45P]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTATTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGGGTGACTACAACAGATGATACCGCCAATACGTCTATAGGTACGTATAAGGAGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685