Detailed information NTG0909028

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: SM130_RS07875
• Genome accession: NZ_CP139348
• Coordinates: 1716564..1718795 (+)
• Length: 743 a.a.
• NCBI ID: WP_102823550.1
• Uniprot ID: A0A2N8S724
• Organism: Stutzerimonas stutzeri strain KC
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1711564..1723795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SM130_RS07845 (SM130_07845)	-	1711714..1712022 (-)	309	WP_102823546.1	phosphodiesterase	-
SM130_RS07850 (SM130_07850)	-	1712026..1712661 (-)	636	WP_102823547.1	PilZ domain-containing protein	-
SM130_RS07855 (SM130_07855)	-	1712696..1713943 (+)	1248	WP_102823889.1	lipoprotein-releasing ABC transporter permease subunit	-
SM130_RS07860 (SM130_07860)	lolD	1713951..1714649 (+)	699	WP_102823890.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
SM130_RS07865 (SM130_07865)	-	1714649..1715893 (+)	1245	WP_102823548.1	lipoprotein-releasing ABC transporter permease subunit	-
SM130_RS07870 (SM130_07870)	-	1715900..1716415 (-)	516	WP_102823549.1	DUF2062 domain-containing protein	-
SM130_RS07875 (SM130_07875)	comA	1716564..1718795 (+)	2232	WP_102823550.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
SM130_RS07880 (SM130_07880)	-	1718867..1719499 (+)	633	WP_003299642.1	MotA/TolQ/ExbB proton channel family protein	-
SM130_RS07885 (SM130_07885)	-	1719496..1719924 (+)	429	WP_102823551.1	biopolymer transporter ExbD	-
SM130_RS07890 (SM130_07890)	lpxK	1719924..1720928 (+)	1005	WP_102823552.1	tetraacyldisaccharide 4'-kinase	-
SM130_RS07895 (SM130_07895)	-	1720974..1721159 (+)	186	WP_102823553.1	Trm112 family protein	-
SM130_RS07900 (SM130_07900)	kdsB	1721156..1721920 (+)	765	WP_102823554.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
SM130_RS07905 (SM130_07905)	-	1721922..1722386 (+)	465	WP_102823555.1	low molecular weight protein-tyrosine-phosphatase	-
SM130_RS07910 (SM130_07910)	murB	1722383..1723402 (+)	1020	WP_102823556.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 80485.06 Da
• Isoelectric Point: 9.2315

>NTDB_id=909028 SM130_RS07875 WP_102823550.1 1716564..1718795(+) (comA) [Stutzerimonas stutzeri strain KC]
MRTLMLALAAGLVLPRFLPVLPASWACAAFAAVGVLMLVHRRWAALALFLLGLSWACYQSQNAMDDRLPASMDGRTFWIE
GTVVGLPGTIGDVVRFELGDIESRHAGLPSRVRLSWYGGPQLRAGERWRLAARLKRPRGLVNPQSFDYEAWLLARGIGAT
GTVKAGERVSTSAVAAADGWRDRLRARLMDVSAFDRQGAIAALVVGDDSGLSRRDWQVLQDTGTVHLMVISGQHIGMLAG
LLYGLVALLARLGVWPSRWSWLPCACGLAFAGALSYGWLAGFDVPVRRACLMVAVVLLWRLRFRHLGVWQPLLLALNGVL
LTDPLVTLQPGFWLSFGAVAVLVLAFSGRLGRWAWWKTLTRAQWAATLGLLPLLMALGLPVSASGPLANLIAVPWVSLTV
PVALLGTVLLALGGIGEALLWLAGGSLALLFELLSIIAAWQPAWLVVGLPYWALLMVGLAVLLLLMPAGIPLRALGLVLL
LPLVFPPRTEVPEGRAQVQVLDVGQGLSVLVRTREHALLYDAGPRQGDFDTGERVVFPSLRSLGVSQLDMLLLSHADNDH
SGGAQAIQRLMPVAKIISGEPQRHAAELGALPCDSGSEWQWDHVRFSLWQWQAARESNQMSCVLLVEANGERVLLTGDID
EVAERALLGSGRDVQAQWLLLPHHGSRSSSSEPFLRAVAPDAALVSRSLHNAFGHPHPSVSARLAALGIDAYDTALHGAI
RIDLGDFSAAEVERAKRRFWREK

Nucleotide

• Length: 2232 bp

>NTDB_id=909028 SM130_RS07875 WP_102823550.1 1716564..1718795(+) (comA) [Stutzerimonas stutzeri strain KC]
ATGCGGACATTAATGCTGGCGCTCGCCGCGGGGCTTGTATTGCCGCGGTTCCTGCCGGTGCTGCCTGCGAGCTGGGCCTG
CGCAGCGTTCGCCGCGGTTGGCGTGCTGATGCTCGTGCACAGGAGGTGGGCCGCGCTGGCCTTGTTTCTTCTTGGCTTGA
GCTGGGCCTGTTACCAGAGCCAAAACGCCATGGACGACCGCCTGCCGGCCTCAATGGATGGCCGTACGTTCTGGATAGAA
GGGACGGTGGTCGGCCTGCCTGGCACGATTGGCGATGTAGTGCGCTTCGAACTTGGCGATATCGAGTCGCGCCACGCCGG
TTTGCCATCGAGGGTGCGCCTATCCTGGTATGGCGGGCCGCAGCTCCGGGCCGGCGAGCGCTGGCGGTTGGCGGCGCGAC
TGAAGCGTCCCCGCGGTCTGGTCAACCCACAATCGTTCGACTACGAAGCCTGGCTGCTGGCACGCGGTATTGGCGCGACC
GGCACTGTCAAGGCCGGGGAGCGTGTGTCGACTTCGGCAGTTGCTGCGGCCGACGGCTGGCGCGACCGGCTGAGGGCGCG
TCTGATGGACGTTTCGGCATTCGATCGGCAGGGCGCAATCGCGGCGCTGGTGGTAGGTGACGATTCCGGCTTGAGCCGCC
GTGATTGGCAGGTACTACAGGACACGGGCACCGTGCACCTGATGGTCATTTCGGGCCAGCACATTGGCATGCTGGCGGGG
TTGCTGTACGGGCTGGTCGCGCTGCTAGCTCGGTTGGGTGTCTGGCCGAGTCGGTGGTCGTGGCTACCTTGCGCGTGCGG
ACTGGCCTTTGCCGGTGCGCTTTCTTACGGCTGGCTCGCAGGGTTTGATGTTCCTGTCCGACGCGCCTGCCTCATGGTTG
CGGTGGTCCTGCTCTGGCGCTTGCGTTTCCGTCATCTGGGCGTATGGCAGCCGCTGCTGCTTGCGCTCAATGGTGTTCTG
CTGACCGATCCGCTGGTCACTTTGCAACCGGGGTTCTGGCTCTCCTTCGGTGCCGTTGCGGTGCTGGTTTTGGCTTTCTC
CGGACGGCTAGGTCGGTGGGCTTGGTGGAAGACGCTGACGCGGGCGCAATGGGCCGCGACCCTGGGCCTGCTTCCACTAT
TGATGGCGCTGGGCCTGCCGGTCAGTGCCAGCGGTCCGTTGGCCAATTTGATCGCCGTTCCCTGGGTGAGTCTGACTGTG
CCCGTGGCGCTTCTAGGTACGGTACTTTTAGCCCTAGGTGGAATCGGCGAAGCGCTGCTTTGGCTGGCCGGCGGCTCCCT
CGCGCTGCTATTTGAGCTATTGAGCATCATCGCCGCCTGGCAACCTGCCTGGTTGGTTGTCGGTTTGCCTTACTGGGCAC
TGCTGATGGTCGGGTTGGCCGTTTTGCTGTTGCTGATGCCCGCGGGCATCCCGCTGCGCGCGCTGGGGCTGGTACTGCTG
TTGCCCTTGGTGTTCCCGCCACGCACCGAAGTGCCGGAGGGACGAGCACAGGTGCAGGTGCTGGATGTGGGGCAGGGGTT
GTCGGTGTTGGTGCGAACTCGCGAGCATGCTCTGCTCTATGACGCGGGGCCACGGCAGGGCGATTTCGATACGGGCGAGC
GGGTCGTCTTTCCTTCTTTGCGAAGCCTGGGTGTAAGTCAGCTGGATATGCTGCTGCTTAGCCATGCCGACAATGATCAT
TCCGGTGGCGCCCAGGCGATCCAGCGCTTGATGCCGGTAGCGAAGATAATCAGCGGAGAGCCGCAACGGCACGCAGCTGA
ACTGGGTGCGCTGCCCTGCGACAGTGGATCGGAGTGGCAGTGGGACCATGTGCGCTTCAGCCTCTGGCAATGGCAGGCGG
CACGCGAAAGCAATCAGATGTCATGCGTTCTGTTGGTCGAGGCTAACGGTGAGCGCGTGCTGCTCACGGGCGACATCGAT
GAGGTAGCGGAGCGGGCATTGCTAGGCAGCGGACGGGATGTGCAGGCGCAGTGGCTGCTGCTGCCGCATCATGGCAGTCG
CAGCTCTTCGTCGGAGCCGTTCCTGCGGGCAGTAGCGCCGGACGCGGCGCTTGTCTCGCGCAGTCTCCACAATGCCTTCG
GGCATCCTCACCCAAGTGTGAGCGCTCGGCTCGCGGCTCTTGGCATCGATGCTTATGACACCGCTTTGCATGGTGCCATT
CGGATTGATCTCGGCGACTTCTCGGCCGCCGAGGTGGAGCGCGCGAAACGTCGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (24-168)

• Competence protein (Competence) (203-466)

• Metallo-beta-lactamase superfamily (Lactamase_B) (502-685)

3D structure

• AlphaFold DB: A0A2N8S724

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.877	96.366	0.654
comA	Ralstonia pseudosolanacearum GMI1000	37.404	100	0.392