Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SM130_RS03070 Genome accession   NZ_CP139348
Coordinates   702979..704571 (-) Length   530 a.a.
NCBI ID   WP_102824359.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain KC     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 697979..709571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM130_RS03055 (SM130_03055) - 698598..700193 (-) 1596 WP_102824356.1 PleD family two-component system response regulator -
  SM130_RS03060 (SM130_03060) - 700408..701466 (+) 1059 WP_102824357.1 DUF2333 family protein -
  SM130_RS03065 (SM130_03065) pilR 701508..702845 (-) 1338 WP_102824358.1 sigma-54 dependent transcriptional regulator Regulator
  SM130_RS03070 (SM130_03070) pilS 702979..704571 (-) 1593 WP_102824359.1 ATP-binding protein Regulator
  SM130_RS03075 (SM130_03075) - 704561..704791 (-) 231 WP_102824360.1 PP0621 family protein -
  SM130_RS03080 (SM130_03080) - 704910..705899 (-) 990 WP_102824361.1 outer membrane protein assembly factor BamD -
  SM130_RS03085 (SM130_03085) rluD 706106..707080 (+) 975 WP_102824362.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SM130_RS03090 (SM130_03090) pgeF 707077..707814 (+) 738 WP_256044870.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59013.96 Da        Isoelectric Point: 7.5779

>NTDB_id=909023 SM130_RS03070 WP_102824359.1 702979..704571(-) (pilS) [Stutzerimonas stutzeri strain KC]
MGSENLTFFGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLIVNILVAVLVQSPERDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGKVGFFIAAVAATGLIYLTFYLSISRPEASSQYVQSGALG
TLCFAAAFLVQGLTRRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQESLTGERLA
PRCPELLKALQQWRGNPTLRPHNLKATADGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLHESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFVSEYRQGLSAQ
QTVHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHERAQVWLRLFREESSDLPVVEVLDDGPGIAAEQLHNLFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERSEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=909023 SM130_RS03070 WP_102824359.1 702979..704571(-) (pilS) [Stutzerimonas stutzeri strain KC]
GTGGGCTCTGAAAATCTCACGTTCTTTGGCGACCAGGGACGGCGGATCCTTCGCCTGTATCACCTTTATCGCCTGACCAT
CGGTCTGGCGCTGGTCCTGCTGATAAGCAGCGACCTGCACAACGACCTGCTGCAGATGAGCAATCCGCAGCTGTTTCAGT
ACGGCGCCTGGCTCTACCTGATAGTCAACATACTTGTCGCCGTGCTGGTTCAGAGCCCGGAGCGCGATCTGCCCGTGCTT
GGCCTCGCGTTGATGGACGTGATTCTGCTGTCGGGATTGTTCTATTTCGGCGGTGGCACACCGAGCGGAATCGGCAACCT
GCTGATCGTCGCCGTCGCCATCGCCAACATCTTGTTGCGAGGCAAGGTGGGCTTCTTCATCGCGGCAGTGGCGGCGACGG
GGCTGATCTATCTGACTTTCTACCTCAGCATCAGCCGCCCCGAAGCCAGTAGCCAGTACGTACAGTCCGGCGCGCTCGGC
ACGCTTTGCTTTGCCGCGGCGTTTCTCGTGCAAGGACTGACCCGACGCCTGCAGGTCAGTGAGACGCTGGCCCGCCAGCG
TGCTGAAGAGGTTGCCAACCTCGAAGCCCTCAACGCGCTGATTCTTCAGCGCATGCGCACCGGCATCATGGTCCTGGACC
CCCAGGAACGCGTGCTGCTTGCCAACCAGGGCGCGTTGCAGCTGCTCGGTCAGGAATCGCTGACTGGCGAACGCCTTGCC
CCGCGCTGCCCGGAACTGCTCAAGGCCCTGCAGCAATGGCGTGGCAATCCAACCTTGCGCCCGCACAATCTCAAGGCAAC
GGCGGACGGCCCAACGCTGCAGCCGAGTTTCGCTGCGCTGCAACACGGTAACAAGCTCGATACGCTGGTGTTTCTTGAGG
ACATATCGCAGATCGCGCAGAAGGCGCAACAGCTCAAACTCGCCTCCCTTGGTCGACTGACCGCCAGCATCGCCCACGAG
ATCCGCAACCCGCTGGGCGCGATCAGCCATGCCGCGCAACTGTTGCATGAGTCCGAAGAGCTGGACGGCCCCGACCGACG
CCTGGCGCAAATCATTCAGGATCATTCACGACGGATGAATCTGGTGATCGAGAACGTTCTGCAACTCTCGCGACGACGCC
AGTCCGAGCCGCAACTGCTTGACCTCAAGTACTGGCTGCACCGTTTCGTGAGCGAGTACCGCCAAGGACTCAGCGCGCAA
CAAACCGTGCACCTGGAAACCATCGGCAGCTCGCTGCAAACCCGCATGGACCCCAACCAACTGACCCAGGTGCTTACGAA
TCTGGTGCAGAACGGCCTGCGCTACAGCGGCCAGCAACACGAGCGTGCGCAAGTCTGGCTGCGCCTGTTCCGCGAGGAGA
GCAGCGATCTGCCAGTCGTCGAAGTACTCGACGACGGCCCGGGTATCGCCGCCGAGCAGCTGCATAACCTGTTCGAGCCC
TTTTTTACCACTGAAAGCAAGGGCACCGGATTGGGCCTGTATATCTCGCGCGAGCTGTGCGAGAGCAATCAGGCGCGCCT
GGATTACCGCGAGCGCAGCGAAGGTGGCAGCTGCTTCCGCATCGTCTTTGCCCACCCGCGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(202-245)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.604

100

0.666