Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI74_RS15905 Genome accession   NZ_CP139287
Coordinates   3343611..3343991 (+) Length   126 a.a.
NCBI ID   WP_017482272.1    Uniprot ID   A0A9X3QIG5
Organism   Acinetobacter pittii strain 564U     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3338611..3348991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS15875 (SOI74_15875) kdsB 3339517..3340278 (+) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SOI74_RS15880 (SOI74_15880) holB 3340292..3341272 (+) 981 WP_017482275.1 DNA polymerase III subunit delta' -
  SOI74_RS15885 (SOI74_15885) pilZ 3341283..3341624 (+) 342 WP_002121335.1 PilZ domain-containing protein -
  SOI74_RS15890 (SOI74_15890) ycfH 3341642..3342415 (+) 774 WP_057085323.1 TatD family hydrolase -
  SOI74_RS15895 (SOI74_15895) - 3342452..3343060 (+) 609 WP_057085321.1 TetR/AcrR family transcriptional regulator -
  SOI74_RS15900 (SOI74_15900) - 3343067..3343621 (+) 555 WP_039761075.1 type II secretion system protein -
  SOI74_RS15905 (SOI74_15905) xcpV 3343611..3343991 (+) 381 WP_017482272.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI74_RS15910 (SOI74_15910) xcpW 3343991..3344746 (+) 756 WP_057085318.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI74_RS15915 (SOI74_15915) gspK 3344747..3345706 (+) 960 WP_057085316.1 type II secretion system minor pseudopilin GspK -
  SOI74_RS15920 (SOI74_15920) - 3345934..3346530 (+) 597 WP_017386831.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI74_RS15925 (SOI74_15925) ung 3346584..3347297 (+) 714 WP_005069527.1 uracil-DNA glycosylase -
  SOI74_RS15930 (SOI74_15930) hibch 3347294..3348418 (+) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  SOI74_RS15935 (SOI74_15935) tadA 3348424..3348927 (+) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=908828 SOI74_RS15905 WP_017482272.1 3343611..3343991(+) (xcpV) [Acinetobacter pittii strain 564U]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908828 SOI74_RS15905 WP_017482272.1 3343611..3343991(+) (xcpV) [Acinetobacter pittii strain 564U]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCACAGTTTGTCGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAACAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCTACAATTAGTCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937