NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	SOI74_RS08940	Genome accession	NZ_CP139287
Coordinates	1899156..1900016 (-)	Length	286 a.a.
NCBI ID	WP_017481949.1	Uniprot ID	A0A6S4VFF3
Organism	Acinetobacter pittii strain 564U
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1894156..1905016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOI74_RS08915 (SOI74_08915)	-	1895046..1896356 (+)	1311	WP_017481948.1	tetratricopeptide repeat protein	-
SOI74_RS08920 (SOI74_08920)	-	1896433..1896759 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
SOI74_RS08925 (SOI74_08925)	rlmB	1896862..1897611 (+)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SOI74_RS08930 (SOI74_08930)	-	1897647..1898561 (+)	915	WP_017398726.1	DMT family transporter	-
SOI74_RS08935 (SOI74_08935)	coaE	1898558..1899154 (-)	597	WP_017398727.1	dephospho-CoA kinase	-
SOI74_RS08940 (SOI74_08940)	pilD	1899156..1900016 (-)	861	WP_017481949.1	prepilin peptidase	Machinery gene
SOI74_RS08945 (SOI74_08945)	pilC	1900016..1901242 (-)	1227	WP_017481950.1	type II secretion system F family protein	Machinery gene
SOI74_RS08950 (SOI74_08950)	pilB	1901269..1902981 (-)	1713	WP_017385371.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SOI74_RS08955 (SOI74_08955)	tpiA	1903273..1904067 (+)	795	WP_017481951.1	triose-phosphate isomerase	-
SOI74_RS08960 (SOI74_08960)	secG	1904080..1904409 (+)	330	WP_002115012.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32119.62 Da Isoelectric Point: 6.4261

                                >NTDB_id=908813 SOI74_RS08940 WP_017481949.1 1899156..1900016(-) (pilD) [Acinetobacter pittii strain 564U]

MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGDCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR

FTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=908813 SOI74_RS08940 WP_017481949.1 1899156..1900016(-) (pilD) [Acinetobacter pittii strain 564U]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG

TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA

ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCGATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA

TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT

TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAGTATTTACACCTCGCCTAACTCAGCCATTTGGGG

ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6S4VFF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	53.846	95.455	0.514
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437

Detailed information NTG0908813