Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SOI74_RS08465 Genome accession   NZ_CP139287
Coordinates   1805495..1806907 (-) Length   470 a.a.
NCBI ID   WP_017481910.1    Uniprot ID   A0A6S4VFI4
Organism   Acinetobacter pittii strain 564U     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800495..1811907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS08450 (SOI74_08450) lptG 1801547..1802617 (+) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -
  SOI74_RS08455 (SOI74_08455) gpmI 1802744..1804291 (+) 1548 WP_005804050.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SOI74_RS08460 (SOI74_08460) ctpA 1804307..1805491 (+) 1185 WP_002121269.1 S41 family peptidase -
  SOI74_RS08465 (SOI74_08465) pilR 1805495..1806907 (-) 1413 WP_017481910.1 sigma-54-dependent transcriptional regulator Regulator
  SOI74_RS08470 (SOI74_08470) pilS 1806931..1808499 (-) 1569 WP_202744975.1 sensor histidine kinase Regulator
  SOI74_RS08475 (SOI74_08475) gacA 1808510..1809145 (-) 636 WP_002121174.1 response regulator -
  SOI74_RS08480 (SOI74_08480) pbpG 1809358..1810404 (+) 1047 WP_141690933.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI74_RS08485 (SOI74_08485) thrC 1810513..1811652 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52609.70 Da        Isoelectric Point: 6.5594

>NTDB_id=908809 SOI74_RS08465 WP_017481910.1 1805495..1806907(-) (pilR) [Acinetobacter pittii strain 564U]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPAVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGKEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=908809 SOI74_RS08465 WP_017481910.1 1805495..1806907(-) (pilR) [Acinetobacter pittii strain 564U]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGCTTAGAATTGGTCCAACATGTTTCTCAAACTTACCCACACACTCCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCTGGAGCTTTTGATTTTGTCAGCAAACC
TATTAACCAAATTCACTTAGATCAATTGTTAAAAAAGGCGCTCAACCAGCCAAAACCAGAGCATGAGTTCGGTGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAGTCTGGTACGGGTAAAGAAGTTGTTGCTAATCTGATTCACCGATTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCGACTCAAGATAAACAAGGTCTTATTTTATCAGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGGGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCCAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTACGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAGACTTA
CTTATTGCAGCAAGACTTCCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGGGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCGCCTCCTCTTAGAGGCAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGGCTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCTCTGAACATGACGCATTGGAATCGAACTTTAGCGGCTAAAAAGTTAGGAATGACATTCCGTTCTTTAC
GCTATCGACTAAAAAAGTTTGGCTTAGATACTGAAATGGGAAAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S4VFI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.047

100

0.866
  pilR Pseudomonas aeruginosa PAK

51.096

97.021

0.496