Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SOI81_RS16240 Genome accession   NZ_CP139286
Coordinates   3440407..3441975 (+) Length   522 a.a.
NCBI ID   WP_320541000.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3435407..3446975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS16220 (SOI81_16220) hom 3435900..3437201 (+) 1302 WP_016142448.1 homoserine dehydrogenase -
  SOI81_RS16225 (SOI81_16225) thrC 3437256..3438395 (+) 1140 WP_216946756.1 threonine synthase -
  SOI81_RS16230 (SOI81_16230) pbpG 3438502..3439548 (-) 1047 WP_155237659.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI81_RS16235 (SOI81_16235) gacA 3439761..3440396 (+) 636 WP_002121174.1 response regulator -
  SOI81_RS16240 (SOI81_16240) pilS 3440407..3441975 (+) 1569 WP_320541000.1 PAS domain-containing sensor histidine kinase Regulator
  SOI81_RS16245 (SOI81_16245) pilR 3442000..3443415 (+) 1416 WP_320541001.1 sigma-54 dependent transcriptional regulator Regulator
  SOI81_RS16250 (SOI81_16250) ctpA 3443419..3444603 (-) 1185 WP_016142453.1 S41 family peptidase -
  SOI81_RS16255 (SOI81_16255) gpmI 3444619..3446166 (-) 1548 WP_320541002.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 58994.60 Da        Isoelectric Point: 6.4990

>NTDB_id=908777 SOI81_RS16240 WP_320541000.1 3440407..3441975(+) (pilS) [Acinetobacter pittii strain AbaK]
MQFPINSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDTSLQQPALYSYTLLGYSILSLLQLLCFKFVATQATRQ
LVLFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDIEQQNTLRNMIGKQTKRIDSIVQDTLGLARGERTYPIQIELNDFIKTLLDEDLSDVK
HTIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPHILINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=908777 SOI81_RS16240 WP_320541000.1 3440407..3441975(+) (pilS) [Acinetobacter pittii strain AbaK]
ATGCAATTTCCCATAAACTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACACTAGTCTACAACAACCCGCTTTATATTCTT
ACACACTACTCGGCTATTCAATCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTGTTGCTACTCAGGCAACACGCCAG
CTTGTTTTATTTTTTATAGTTGATGTTATTTGCCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATTTACAACTCAG
CTTGCTCTATGTTATTGCCATATTTACCTCAGCAATTTTACTTAGCGCAAGAATGTCTTTGCTCATTACATTACTTGCGG
TTATTGCTGTTATCTACCAACGCTTTGTAGGCAGTTTATTTGATTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCATTCTTATTTTTTGTAGTACACGGCATCGGGCAAATTGCGGTCCAGCGCTTTAAGTTACTTGAGGCGCTGACTTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAAGGTTATTTAGTTC
TAGATGAAAACTACGACATCGTTTTAAGTAACCCAGCAGCATGTTCACTTTTAGGGATTCCACCTCAATTTGCCAGTGAA
AAATACCCCCTAGCTAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAAGAAGGTGATCGGTTTAT
TTTTGAGTCTCGGCTTTCGGCCTACTCTATTAATATTAAAGTGCAGCATCTTTTAGTACCACAACAAGCATTGACACTAC
TCATCTTACAAGATGCACAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGGCAACTCTCAGCAAGT
ATTGCACATGAAATCCGCAATCCTCTTGCAGCAATTGTGCAAGCAAATGAACTGCTTAAAGATAGTGATATTGAACAGCA
AAATACTTTACGCAATATGATTGGCAAGCAAACCAAACGCATCGATAGTATTGTTCAAGATACATTAGGACTTGCCCGTG
GTGAAAGAACCTACCCAATCCAGATTGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATCTATCTGATGTTAAA
CATACCATCCAGCTTAAAATTTCTGACTCATCCTTAAAACTCTTATTTGATGAAAAACAGCTCAGACAAGTGCTGATTAA
TCTTGTTAGAAATGCTTTACGACATAATGCACCCGACTCACCGCATATCTTGATCAATATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTCAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATAGCGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-517)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.061

100

0.941