Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI81_RS09185 Genome accession   NZ_CP139286
Coordinates   1960650..1961030 (-) Length   126 a.a.
NCBI ID   WP_239976060.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1955650..1966030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS09155 (SOI81_09155) tadA 1955767..1956270 (-) 504 WP_320540588.1 tRNA adenosine(34) deaminase TadA -
  SOI81_RS09160 (SOI81_09160) hibch 1956275..1957399 (-) 1125 WP_080649467.1 enoyl-CoA hydratase/isomerase family protein -
  SOI81_RS09165 (SOI81_09165) ung 1957396..1958109 (-) 714 WP_016141191.1 uracil-DNA glycosylase -
  SOI81_RS09170 (SOI81_09170) - 1958163..1958759 (-) 597 WP_239976057.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI81_RS09175 (SOI81_09175) gspK 1958988..1959947 (-) 960 WP_239976058.1 type II secretion system minor pseudopilin GspK -
  SOI81_RS09180 (SOI81_09180) xcpW 1959949..1960650 (-) 702 WP_239976059.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI81_RS09185 (SOI81_09185) xcpV 1960650..1961030 (-) 381 WP_239976060.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI81_RS09190 (SOI81_09190) - 1961020..1961571 (-) 552 WP_239976061.1 type II secretion system protein -
  SOI81_RS09195 (SOI81_09195) - 1961578..1962186 (-) 609 WP_016141197.1 TetR/AcrR family transcriptional regulator -
  SOI81_RS09200 (SOI81_09200) ycfH 1962223..1962996 (-) 774 WP_224991778.1 TatD family hydrolase -
  SOI81_RS09205 (SOI81_09205) pilZ 1963014..1963355 (-) 342 WP_025470317.1 PilZ domain-containing protein -
  SOI81_RS09210 (SOI81_09210) holB 1963366..1964346 (-) 981 WP_239976062.1 DNA polymerase III subunit delta' -
  SOI81_RS09215 (SOI81_09215) kdsB 1964360..1965121 (-) 762 WP_239976063.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13968.11 Da        Isoelectric Point: 9.4463

>NTDB_id=908759 SOI81_RS09185 WP_239976060.1 1960650..1961030(-) (xcpV) [Acinetobacter pittii strain AbaK]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAIFRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDVQVSLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908759 SOI81_RS09185 WP_239976060.1 1960650..1961030(-) (xcpV) [Acinetobacter pittii strain AbaK]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTGATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGCTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTTTTAGAACAAAAGCACAGTTTGTTGCAATGAATGAAGTTG
CTTTAATGGAAATAAATCAGGAATGGCTTGAAGGTACACAAAGTAAGCAAGTGACTTCTCAAGGCGAGACTTGGCAGATT
GATAAATCTGCGCAATCTACAATTAGTCCAAATGTTCAAAAAGTAGATGTACAAGTTAGTTTATATGATTCTGATAAGGG
GAAAGTTCAAAATGGTATTACCCACTTGGTATTTTTTAATTATCCAATGAAAGCGAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-102)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937