Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SOI81_RS01935 Genome accession   NZ_CP139286
Coordinates   412498..413127 (-) Length   209 a.a.
NCBI ID   WP_239975671.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407498..418127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS01900 (SOI81_01900) mlaE 407828..408604 (+) 777 WP_016142958.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SOI81_RS01905 (SOI81_01905) - 408604..409287 (+) 684 WP_014207762.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SOI81_RS01910 (SOI81_01910) - 409314..409955 (+) 642 WP_016142959.1 phospholipid-binding protein MlaC -
  SOI81_RS01915 (SOI81_01915) - 409967..410254 (+) 288 WP_016142960.1 lipid asymmetry maintenance protein MlaB -
  SOI81_RS01920 (SOI81_01920) - 410327..411340 (-) 1014 WP_016142961.1 magnesium and cobalt transport protein CorA -
  SOI81_RS01925 (SOI81_01925) - 411499..412080 (+) 582 WP_239975670.1 TIGR00730 family Rossman fold protein -
  SOI81_RS01930 (SOI81_01930) mutT 412095..412496 (+) 402 WP_057074644.1 NUDIX hydrolase -
  SOI81_RS01935 (SOI81_01935) comF 412498..413127 (-) 630 WP_239975671.1 ComF family protein Machinery gene
  SOI81_RS01940 (SOI81_01940) recG 413120..415165 (-) 2046 WP_005067253.1 ATP-dependent DNA helicase RecG -
  SOI81_RS01945 (SOI81_01945) - 415186..416001 (+) 816 WP_016142965.1 NAD(P)H-binding protein -
  SOI81_RS01950 (SOI81_01950) - 416081..417064 (+) 984 WP_239975673.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24430.64 Da        Isoelectric Point: 9.8066

>NTDB_id=908750 SOI81_RS01935 WP_239975671.1 412498..413127(-) (comF) [Acinetobacter pittii strain AbaK]
MFSFLNVQHLIQLFSPCSLCELGAREKYSLCKDCWEQLPWLKQTIQRNNQTVLVACDYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFVPH
HKEKRRYRRVLIIDDVITTGSSIHALSQALQQLGCTSIHMACLAATLKN

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908750 SOI81_RS01935 WP_239975671.1 412498..413127(-) (comF) [Acinetobacter pittii strain AbaK]
ATGTTTAGTTTTTTAAACGTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGTGAGTTAGGGGCGCGAGAAAA
ATATTCACTTTGTAAAGACTGTTGGGAACAGCTGCCTTGGCTTAAACAAACGATTCAACGTAATAATCAAACTGTTCTTG
TGGCCTGTGACTATGCTTATCCAGTTAACCGAATTATTCAGCAGTTTAAATATGAACAGAAATTACATTATCAAATCTTA
TTAGGGGAAATTTTAAAACAATTAAAATTTCCTAAAGTACAAGCTATTGTACCCATGCCCATTTCCAATCAACGTTTAAT
TGAACGTGGTTTCAATCAGTCATTATTACTTGCCAATATTTTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGTTTAAACGAACATTCTCAAAAAGGTCTTTCTCGACTAGAACGTTTTGAAAATATAGAACAACAATTTGTACCTCAT
CATAAAGAGAAACGACGTTATCGCCGTGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTATTCATGCGCTCAG
TCAAGCCCTTCAACAATTAGGCTGCACATCTATTCACATGGCTTGCCTAGCGGCAACACTAAAGAATTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

85.437

98.565

0.842
  comF Acinetobacter baumannii D1279779

84.466

98.565

0.833