Detailed information NTG0908707

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SOI75_RS12015
• Genome accession: NZ_CP139282
• Coordinates: 2470909..2471769 (+)
• Length: 286 a.a.
• NCBI ID: WP_002114758.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain AE13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2465909..2476769

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOI75_RS11995 (SOI75_11995)	secG	2466516..2466845 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
SOI75_RS12000 (SOI75_12000)	tpiA	2466858..2467652 (-)	795	WP_002114826.1	triose-phosphate isomerase	-
SOI75_RS12005 (SOI75_12005)	pilB	2467944..2469656 (+)	1713	WP_005804145.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SOI75_RS12010 (SOI75_12010)	pilC	2469683..2470909 (+)	1227	WP_002114869.1	type II secretion system F family protein	Machinery gene
SOI75_RS12015 (SOI75_12015)	pilD	2470909..2471769 (+)	861	WP_002114758.1	prepilin peptidase	Machinery gene
SOI75_RS12020 (SOI75_12020)	coaE	2471771..2472367 (+)	597	WP_002115011.1	dephospho-CoA kinase	-
SOI75_RS12025 (SOI75_12025)	-	2472364..2473278 (-)	915	WP_019768057.1	DMT family transporter	-
SOI75_RS12030 (SOI75_12030)	rlmB	2473314..2474063 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SOI75_RS12035 (SOI75_12035)	-	2474166..2474492 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
SOI75_RS12040 (SOI75_12040)	-	2474569..2475879 (-)	1311	WP_057689977.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32168.70 Da
• Isoelectric Point: 7.1044

>NTDB_id=908707 SOI75_RS12015 WP_002114758.1 2470909..2471769(+) (pilD) [Acinetobacter pittii strain AE13]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=908707 SOI75_RS12015 WP_002114758.1 2470909..2471769(+) (pilD) [Acinetobacter pittii strain AE13]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTCCCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437