Detailed information NTG0908633

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SOI77_RS17605
• Genome accession: NZ_CP139275
• Coordinates: 3715195..3716055 (+)
• Length: 286 a.a.
• NCBI ID: WP_320561853.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain HCG138
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3710195..3721055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOI77_RS17585 (SOI77_17585)	secG	3710802..3711131 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
SOI77_RS17590 (SOI77_17590)	tpiA	3711144..3711938 (-)	795	WP_005079338.1	triose-phosphate isomerase	-
SOI77_RS17595 (SOI77_17595)	pilB	3712230..3713942 (+)	1713	WP_130120471.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SOI77_RS17600 (SOI77_17600)	pilC	3713969..3715195 (+)	1227	WP_119684816.1	type II secretion system F family protein	Machinery gene
SOI77_RS17605 (SOI77_17605)	pilD	3715195..3716055 (+)	861	WP_320561853.1	A24 family peptidase	Machinery gene
SOI77_RS17610 (SOI77_17610)	coaE	3716057..3716653 (+)	597	WP_320561854.1	dephospho-CoA kinase	-
SOI77_RS17615 (SOI77_17615)	-	3716650..3717564 (-)	915	WP_320561855.1	DMT family transporter	-
SOI77_RS17620 (SOI77_17620)	rlmB	3717600..3718349 (-)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SOI77_RS17625 (SOI77_17625)	-	3718452..3718778 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
SOI77_RS17630 (SOI77_17630)	-	3718855..3720165 (-)	1311	WP_320561856.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32115.64 Da
• Isoelectric Point: 7.1789

>NTDB_id=908633 SOI77_RS17605 WP_320561853.1 3715195..3716055(+) (pilD) [Acinetobacter pittii strain HCG138]
MQEIIAYFIQNLTALHIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=908633 SOI77_RS17605 WP_320561853.1 3715195..3716055(+) (pilD) [Acinetobacter pittii strain HCG138]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTCATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAGTATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	54.212	95.455	0.517
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437