Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI77_RS10305 Genome accession   NZ_CP139275
Coordinates   2195685..2196065 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain HCG138     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2190685..2201065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS10275 (SOI77_10275) tadA 2190687..2191190 (-) 504 WP_104079548.1 tRNA adenosine(34) deaminase TadA -
  SOI77_RS10280 (SOI77_10280) hibch 2191196..2192320 (-) 1125 WP_104079547.1 enoyl-CoA hydratase/isomerase family protein -
  SOI77_RS10285 (SOI77_10285) ung 2192317..2193030 (-) 714 WP_032053803.1 uracil-DNA glycosylase -
  SOI77_RS10290 (SOI77_10290) - 2193084..2193680 (-) 597 WP_032053802.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI77_RS10295 (SOI77_10295) gspK 2193910..2194869 (-) 960 WP_320561346.1 type II secretion system minor pseudopilin GspK -
  SOI77_RS10300 (SOI77_10300) xcpW 2194870..2195685 (-) 816 WP_320561347.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI77_RS10305 (SOI77_10305) xcpV 2195685..2196065 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI77_RS10310 (SOI77_10310) - 2196055..2196609 (-) 555 WP_068527582.1 type II secretion system protein -
  SOI77_RS10315 (SOI77_10315) - 2196616..2197224 (-) 609 WP_057085321.1 TetR/AcrR family transcriptional regulator -
  SOI77_RS10320 (SOI77_10320) ycfH 2197261..2198034 (-) 774 WP_320561348.1 TatD family hydrolase -
  SOI77_RS10325 (SOI77_10325) pilZ 2198052..2198393 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  SOI77_RS10330 (SOI77_10330) holB 2198404..2199384 (-) 981 WP_017482275.1 DNA polymerase III subunit delta' -
  SOI77_RS10335 (SOI77_10335) kdsB 2199398..2200159 (-) 762 WP_320561349.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=908618 SOI77_RS10305 WP_002121425.1 2195685..2196065(-) (xcpV) [Acinetobacter pittii strain HCG138]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908618 SOI77_RS10305 WP_002121425.1 2195685..2196065(-) (xcpV) [Acinetobacter pittii strain HCG138]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACCAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937