Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SOI77_RS02075 Genome accession   NZ_CP139275
Coordinates   438833..439462 (-) Length   209 a.a.
NCBI ID   WP_320562024.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433833..444462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS02040 (SOI77_02040) mlaE 434166..434942 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SOI77_RS02045 (SOI77_02045) - 434942..435622 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SOI77_RS02050 (SOI77_02050) - 435649..436290 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  SOI77_RS02055 (SOI77_02055) - 436302..436589 (+) 288 WP_005078357.1 lipid asymmetry maintenance protein MlaB -
  SOI77_RS02060 (SOI77_02060) - 436662..437675 (-) 1014 WP_005078356.1 magnesium and cobalt transport protein CorA -
  SOI77_RS02065 (SOI77_02065) - 437834..438415 (+) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  SOI77_RS02070 (SOI77_02070) mutT 438430..438831 (+) 402 WP_033848810.1 NUDIX hydrolase -
  SOI77_RS02075 (SOI77_02075) comF 438833..439462 (-) 630 WP_320562024.1 ComF family protein Machinery gene
  SOI77_RS02080 (SOI77_02080) recG 439455..441500 (-) 2046 WP_005078352.1 ATP-dependent DNA helicase RecG -
  SOI77_RS02085 (SOI77_02085) - 441521..442336 (+) 816 WP_017403249.1 NAD-dependent epimerase/dehydratase family protein -
  SOI77_RS02090 (SOI77_02090) - 442416..443399 (+) 984 WP_025466709.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24426.55 Da        Isoelectric Point: 10.0074

>NTDB_id=908609 SOI77_RS02075 WP_320562024.1 438833..439462(-) (comF) [Acinetobacter pittii strain HCG138]
MFNFLNFQHLIQLFSPCSLCELGTREKFSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLVLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908609 SOI77_RS02075 WP_320562024.1 438833..439462(-) (comF) [Acinetobacter pittii strain HCG138]
ATGTTTAATTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCACGCGAGAAAA
ATTCTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCAATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCCTTAGTACTCGCCAATATATTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAACACTCTCAAAAAGGACTTTCTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCGACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.732

100

0.837
  comF Acinetobacter baumannii D1279779

82.775

100

0.828