Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SOI80_RS18000 Genome accession   NZ_CP139270
Coordinates   3705304..3706716 (+) Length   470 a.a.
NCBI ID   WP_005079471.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG62     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3700304..3711716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS17980 (SOI80_17985) thrC 3700562..3701701 (+) 1140 WP_002048893.1 threonine synthase -
  SOI80_RS17985 (SOI80_17990) pbpG 3701806..3702852 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI80_RS17990 (SOI80_17995) gacA 3703065..3703700 (+) 636 WP_002121174.1 response regulator -
  SOI80_RS17995 (SOI80_18000) pilS 3703711..3705279 (+) 1569 WP_005079470.1 sensor histidine kinase Regulator
  SOI80_RS18000 (SOI80_18005) pilR 3705304..3706716 (+) 1413 WP_005079471.1 sigma-54-dependent transcriptional regulator Regulator
  SOI80_RS18005 (SOI80_18010) ctpA 3706720..3707904 (-) 1185 WP_005079474.1 S41 family peptidase -
  SOI80_RS18010 (SOI80_18015) gpmI 3707920..3709467 (-) 1548 WP_005079475.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SOI80_RS18015 (SOI80_18020) lptG 3709594..3710664 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52654.70 Da        Isoelectric Point: 6.3452

>NTDB_id=908589 SOI80_RS18000 WP_005079471.1 3705304..3706716(+) (pilR) [Acinetobacter pittii strain HCG62]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRIEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=908589 SOI80_RS18000 WP_005079471.1 3705304..3706716(+) (pilR) [Acinetobacter pittii strain HCG62]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGAATTAAGACACATCTTGCTTATCGGATTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCTGATGGTAGTGGCTTAGAATTGGTCCAACATGTTTCTCAAACTTACCCACACACACCCATT
GCAGTCTTAACCGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAATTGTTAAAAAAGGCGCTTAACCAGCCAAAACCAGAGCATGAGTTCGGTGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCACCTGTGTTTGTTACAGGTGAGTCTGGTACGGGTAAAGAAGTCGTTGCTAATCTGATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCGACTCAAGATAAACAAGGTCTTATTTTATCAGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGGGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCCAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTACGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGGGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCGCCTCCTCTTAGAGGCAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGACTGTTCAGACTCATCCAAAATTTCCAATGGAAGGTTTAGAACGCTACCTAGAAAATATCGAAAAAGATAT
TTTACTAAATGCTCTGAACATGACGCATTGGAATCGAACTTTGGCCGCTAAAAAGCTAGGAATGACATTCCGTTCTTTAC
GCTATCGACTCAAAAAATTTGGCTTAGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.624

100

0.862
  pilR Pseudomonas aeruginosa PAK

50.877

97.021

0.494