Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI80_RS10910 Genome accession   NZ_CP139270
Coordinates   2232732..2233112 (-) Length   126 a.a.
NCBI ID   WP_032007243.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG62     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2227732..2238112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS10880 (SOI80_10885) tadA 2227735..2228238 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  SOI80_RS10885 (SOI80_10890) hibch 2228244..2229368 (-) 1125 WP_080973578.1 enoyl-CoA hydratase/isomerase family protein -
  SOI80_RS10890 (SOI80_10895) ung 2229365..2230078 (-) 714 WP_017399503.1 uracil-DNA glycosylase -
  SOI80_RS10895 (SOI80_10900) - 2230132..2230728 (-) 597 WP_016145101.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI80_RS10900 (SOI80_10905) gspK 2230957..2231916 (-) 960 WP_032007241.1 type II secretion system minor pseudopilin GspK -
  SOI80_RS10905 (SOI80_10910) xcpW 2231917..2232732 (-) 816 WP_032007242.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI80_RS10910 (SOI80_10915) xcpV 2232732..2233112 (-) 381 WP_032007243.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI80_RS10915 (SOI80_10920) - 2233102..2233656 (-) 555 WP_032007244.1 type II secretion system protein -
  SOI80_RS10920 (SOI80_10925) - 2233663..2234271 (-) 609 WP_014206595.1 TetR/AcrR family transcriptional regulator -
  SOI80_RS10925 (SOI80_10930) ycfH 2234308..2235081 (-) 774 WP_005069538.1 TatD family hydrolase -
  SOI80_RS10930 (SOI80_10935) pilZ 2235099..2235440 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  SOI80_RS10935 (SOI80_10940) holB 2235451..2236431 (-) 981 WP_032007245.1 DNA polymerase III subunit delta' -
  SOI80_RS10940 (SOI80_10945) kdsB 2236445..2237206 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13977.15 Da        Isoelectric Point: 8.4453

>NTDB_id=908570 SOI80_RS10910 WP_032007243.1 2232732..2233112(-) (xcpV) [Acinetobacter pittii strain HCG62]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTESKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908570 SOI80_RS10910 WP_032007243.1 2232732..2233112(-) (xcpV) [Acinetobacter pittii strain HCG62]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCGCAGTTTGTGGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTGAAAGTAAGCAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

92.857

100

0.929