Detailed information NTG0908569

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: SOI80_RS10905
• Genome accession: NZ_CP139270
• Coordinates: 2231917..2232732 (-)
• Length: 271 a.a.
• NCBI ID: WP_032007242.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain HCG62
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2226917..2237732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOI80_RS10875 (SOI80_10880)	-	2227224..2227664 (-)	441	WP_032007239.1	SRPBCC family protein	-
SOI80_RS10880 (SOI80_10885)	tadA	2227735..2228238 (-)	504	WP_002121378.1	tRNA adenosine(34) deaminase TadA	-
SOI80_RS10885 (SOI80_10890)	hibch	2228244..2229368 (-)	1125	WP_080973578.1	enoyl-CoA hydratase/isomerase family protein	-
SOI80_RS10890 (SOI80_10895)	ung	2229365..2230078 (-)	714	WP_017399503.1	uracil-DNA glycosylase	-
SOI80_RS10895 (SOI80_10900)	-	2230132..2230728 (-)	597	WP_016145101.1	6-pyruvoyl trahydropterin synthase family protein	-
SOI80_RS10900 (SOI80_10905)	gspK	2230957..2231916 (-)	960	WP_032007241.1	type II secretion system minor pseudopilin GspK	-
SOI80_RS10905 (SOI80_10910)	xcpW	2231917..2232732 (-)	816	WP_032007242.1	type II secretion system minor pseudopilin GspJ	Machinery gene
SOI80_RS10910 (SOI80_10915)	xcpV	2232732..2233112 (-)	381	WP_032007243.1	type II secretion system minor pseudopilin GspI	Machinery gene
SOI80_RS10915 (SOI80_10920)	-	2233102..2233656 (-)	555	WP_032007244.1	type II secretion system protein	-
SOI80_RS10920 (SOI80_10925)	-	2233663..2234271 (-)	609	WP_014206595.1	TetR/AcrR family transcriptional regulator	-
SOI80_RS10925 (SOI80_10930)	ycfH	2234308..2235081 (-)	774	WP_005069538.1	TatD family hydrolase	-
SOI80_RS10930 (SOI80_10935)	pilZ	2235099..2235440 (-)	342	WP_002121335.1	PilZ domain-containing protein	-
SOI80_RS10935 (SOI80_10940)	holB	2235451..2236431 (-)	981	WP_032007245.1	DNA polymerase III subunit delta'	-
SOI80_RS10940 (SOI80_10945)	kdsB	2236445..2237206 (-)	762	WP_002121419.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 271 a.a.
• Molecular weight: 30889.28 Da
• Isoelectric Point: 10.2417

>NTDB_id=908569 SOI80_RS10905 WP_032007242.1 2231917..2232732(-) (xcpW) [Acinetobacter pittii strain HCG62]
MIKNKSFRSPGSASRLAVRSEQMMRGYSEQSSSSCAQTKRRFKDSHTRNTVSHLTVRSSSARLTRASGFTLVELLVSIAI
FAILSLLGWKVFDYLLKVRDRNTQHEVQLFELQDAYQQVLRDTLQIIPLSANQGGQLRPALEVDNQVLRFSKAGVTDPLK
QGLSPFERIEYRYDPDQKKLYRLKYSNLNTSNREQPLSSTLLSQVEQFQIMVLAPQEVTKWPEVNIDPTKPDEFRKLPKG
IKMQLTVAGVSYEWIYSLNQGDLSLSKQGGQ

Nucleotide

• Length: 816 bp

>NTDB_id=908569 SOI80_RS10905 WP_032007242.1 2231917..2232732(-) (xcpW) [Acinetobacter pittii strain HCG62]
ATGATAAAGAATAAAAGTTTTCGCTCTCCAGGCTCAGCTTCACGTCTTGCGGTACGATCGGAGCAGATGATGAGGGGTTA
CTCCGAGCAAAGCTCTTCGTCTTGCGCTCAGACAAAGCGTCGCTTTAAAGACTCTCACACTCGAAACACAGTTTCTCATC
TTACGGTACGATCGAGCAGTGCTCGATTAACTCGTGCCTCAGGGTTTACTTTAGTTGAGCTTTTAGTTTCAATTGCAATT
TTTGCTATTTTATCTTTGTTGGGGTGGAAGGTTTTTGACTATTTATTAAAAGTTCGTGATCGTAATACTCAACATGAAGT
GCAGTTATTTGAATTGCAAGATGCTTATCAACAAGTTTTGCGTGATACATTGCAAATTATACCTTTATCAGCCAATCAAG
GCGGGCAATTACGTCCAGCTTTAGAAGTTGATAATCAAGTTCTTCGCTTTAGTAAGGCGGGTGTTACTGATCCATTAAAG
CAAGGATTATCACCTTTTGAGCGTATCGAATATCGATATGATCCTGATCAAAAAAAGCTTTATCGTCTTAAATATAGTAA
CTTAAATACTTCAAATAGAGAGCAACCTTTATCCAGTACGCTGTTGAGCCAAGTTGAACAATTTCAAATTATGGTGTTGG
CACCTCAAGAAGTGACAAAGTGGCCAGAAGTTAATATTGATCCCACAAAACCTGATGAGTTTAGGAAGTTGCCAAAAGGA
ATAAAAATGCAACTCACGGTTGCAGGTGTAAGTTATGAGTGGATTTATAGCTTAAACCAAGGTGACTTATCGCTCTCCAA
ACAGGGAGGTCAATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (121-250)

• Prokaryotic N-terminal methylation motif (N_methyl) (65-87)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	86.667	83.026	0.72