Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI79_RS18035 Genome accession   NZ_CP139266
Coordinates   3767615..3767995 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain HUM14     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3762615..3772995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS18005 (SOI79_18005) tadA 3762619..3763122 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  SOI79_RS18010 (SOI79_18010) hibch 3763128..3764252 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  SOI79_RS18015 (SOI79_18015) ung 3764249..3764962 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  SOI79_RS18020 (SOI79_18020) - 3765016..3765612 (-) 597 WP_017386831.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI79_RS18025 (SOI79_18025) gspK 3765840..3766799 (-) 960 WP_057062343.1 type II secretion system minor pseudopilin GspK -
  SOI79_RS18030 (SOI79_18030) xcpW 3766800..3767615 (-) 816 WP_068976457.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI79_RS18035 (SOI79_18035) xcpV 3767615..3767995 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI79_RS18040 (SOI79_18040) - 3767985..3768539 (-) 555 WP_068976458.1 type II secretion system protein -
  SOI79_RS18045 (SOI79_18045) - 3768546..3769154 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  SOI79_RS18050 (SOI79_18050) ycfH 3769191..3769964 (-) 774 WP_057062346.1 TatD family hydrolase -
  SOI79_RS18055 (SOI79_18055) pilZ 3769982..3770323 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  SOI79_RS18060 (SOI79_18060) holB 3770334..3771314 (-) 981 WP_057062347.1 DNA polymerase III subunit delta' -
  SOI79_RS18065 (SOI79_18065) kdsB 3771328..3772089 (-) 762 WP_057062348.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=908547 SOI79_RS18035 WP_002121425.1 3767615..3767995(-) (xcpV) [Acinetobacter pittii strain HUM14]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908547 SOI79_RS18035 WP_002121425.1 3767615..3767995(-) (xcpV) [Acinetobacter pittii strain HUM14]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACCAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTTGATTTGCAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937