Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SOI79_RS09800 Genome accession   NZ_CP139266
Coordinates   2047388..2048017 (-) Length   209 a.a.
NCBI ID   WP_005804600.1    Uniprot ID   A0A009NMJ1
Organism   Acinetobacter pittii strain HUM14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2042388..2053017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS09765 (SOI79_09765) mlaE 2042721..2043497 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SOI79_RS09770 (SOI79_09770) - 2043497..2044177 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SOI79_RS09775 (SOI79_09775) - 2044204..2044845 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  SOI79_RS09780 (SOI79_09780) - 2044857..2045144 (+) 288 WP_005078357.1 lipid asymmetry maintenance protein MlaB -
  SOI79_RS09785 (SOI79_09785) corA 2045217..2046230 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  SOI79_RS09790 (SOI79_09790) - 2046389..2046970 (+) 582 WP_005804599.1 TIGR00730 family Rossman fold protein -
  SOI79_RS09795 (SOI79_09795) mutT 2046985..2047386 (+) 402 WP_002116701.1 NUDIX hydrolase -
  SOI79_RS09800 (SOI79_09800) comF 2047388..2048017 (-) 630 WP_005804600.1 ComF family protein Machinery gene
  SOI79_RS09805 (SOI79_09805) recG 2048010..2050055 (-) 2046 WP_005804601.1 ATP-dependent DNA helicase RecG -
  SOI79_RS09810 (SOI79_09810) - 2050076..2050891 (+) 816 WP_005804602.1 NAD-dependent epimerase/dehydratase family protein -
  SOI79_RS09815 (SOI79_09815) - 2050971..2051954 (+) 984 WP_025464186.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24548.68 Da        Isoelectric Point: 9.8063

>NTDB_id=908538 SOI79_RS09800 WP_005804600.1 2047388..2048017(-) (comF) [Acinetobacter pittii strain HUM14]
MFDFLNFKHLIQLFSPCSLCELDTREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908538 SOI79_RS09800 WP_005804600.1 2047388..2048017(-) (comF) [Acinetobacter pittii strain HUM14]
ATGTTTGATTTTTTAAACTTCAAGCATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGACACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCCCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCGACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NMJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823