Detailed information NTG0908445

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SOI70_RS15070
• Genome accession: NZ_CP139258
• Coordinates: 3146804..3147664 (+)
• Length: 286 a.a.
• NCBI ID: WP_005079345.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain HUM3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3141804..3152664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOI70_RS15050 (SOI70_15070)	secG	3142411..3142740 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
SOI70_RS15055 (SOI70_15075)	tpiA	3142753..3143547 (-)	795	WP_005079338.1	triose-phosphate isomerase	-
SOI70_RS15060 (SOI70_15080)	pilB	3143839..3145551 (+)	1713	WP_032042313.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SOI70_RS15065 (SOI70_15085)	pilC	3145578..3146804 (+)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
SOI70_RS15070 (SOI70_15090)	pilD	3146804..3147664 (+)	861	WP_005079345.1	prepilin peptidase	Machinery gene
SOI70_RS15075 (SOI70_15095)	coaE	3147666..3148262 (+)	597	WP_005065869.1	dephospho-CoA kinase	-
SOI70_RS15080 (SOI70_15100)	-	3148259..3149173 (-)	915	WP_130136055.1	DMT family transporter	-
SOI70_RS15085 (SOI70_15105)	rlmB	3149209..3149958 (-)	750	WP_320432612.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SOI70_RS15090 (SOI70_15110)	-	3150061..3150387 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
SOI70_RS15095 (SOI70_15115)	-	3150464..3151774 (-)	1311	WP_002114682.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32183.67 Da
• Isoelectric Point: 7.1044

>NTDB_id=908445 SOI70_RS15070 WP_005079345.1 3146804..3147664(+) (pilD) [Acinetobacter pittii strain HUM3]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=908445 SOI70_RS15070 WP_005079345.1 3146804..3147664(+) (pilD) [Acinetobacter pittii strain HUM3]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTGTTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGTTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCCGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTACTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTTGGTGCAATTATTGGCATCATTTTATTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCCTACATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.853	100	0.969
pilD	Acinetobacter nosocomialis M2	96.503	100	0.965
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.328	91.608	0.434