Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SOI70_RS01040 Genome accession   NZ_CP139258
Coordinates   205182..205811 (-) Length   209 a.a.
NCBI ID   WP_016806074.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200182..210811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS01005 (SOI70_01005) mlaE 200516..201292 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SOI70_RS01010 (SOI70_01010) - 201292..201972 (+) 681 WP_002116957.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SOI70_RS01015 (SOI70_01015) - 201999..202640 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  SOI70_RS01020 (SOI70_01020) - 202652..202939 (+) 288 WP_005078357.1 lipid asymmetry maintenance protein MlaB -
  SOI70_RS01025 (SOI70_01025) - 203012..204025 (-) 1014 WP_005078356.1 magnesium and cobalt transport protein CorA -
  SOI70_RS01030 (SOI70_01030) - 204183..204764 (+) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  SOI70_RS01035 (SOI70_01035) mutT 204779..205180 (+) 402 WP_320432645.1 NUDIX domain-containing protein -
  SOI70_RS01040 (SOI70_01040) comF 205182..205811 (-) 630 WP_016806074.1 ComF family protein Machinery gene
  SOI70_RS01045 (SOI70_01045) recG 205804..207849 (-) 2046 WP_005078352.1 ATP-dependent DNA helicase RecG -
  SOI70_RS01050 (SOI70_01050) - 207870..208685 (+) 816 WP_005078350.1 NAD-dependent epimerase/dehydratase family protein -
  SOI70_RS01055 (SOI70_01055) - 208765..209748 (+) 984 WP_005078349.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24556.76 Da        Isoelectric Point: 9.9657

>NTDB_id=908421 SOI70_RS01040 WP_016806074.1 205182..205811(-) (comF) [Acinetobacter pittii strain HUM3]
MFNFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTVCLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908421 SOI70_RS01040 WP_016806074.1 205182..205811(-) (comF) [Acinetobacter pittii strain HUM3]
ATGTTTAATTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCGATTC
AACGTTTAAACGAGCACTCTCAAAAAGGGCTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACCGTGTGCCTAGCAGCGACGCCGAAGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823