Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SOI71_RS17275 Genome accession   NZ_CP139251
Coordinates   3634167..3635579 (+) Length   470 a.a.
NCBI ID   WP_104075791.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR53     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3629167..3640579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS17255 (SOI71_17245) thrC 3629425..3630564 (+) 1140 WP_104075794.1 threonine synthase -
  SOI71_RS17260 (SOI71_17250) pbpG 3630670..3631716 (-) 1047 WP_146064303.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI71_RS17265 (SOI71_17255) gacA 3631928..3632563 (+) 636 WP_019457005.1 response regulator -
  SOI71_RS17270 (SOI71_17260) pilS 3632574..3634142 (+) 1569 WP_205668770.1 sensor histidine kinase Regulator
  SOI71_RS17275 (SOI71_17265) pilR 3634167..3635579 (+) 1413 WP_104075791.1 sigma-54-dependent transcriptional regulator Regulator
  SOI71_RS17280 (SOI71_17270) ctpA 3635583..3636767 (-) 1185 WP_017400162.1 S41 family peptidase -
  SOI71_RS17285 (SOI71_17275) gpmI 3636783..3638330 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SOI71_RS17290 (SOI71_17280) lptG 3638457..3639527 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52552.61 Da        Isoelectric Point: 6.4524

>NTDB_id=908354 SOI71_RS17275 WP_104075791.1 3634167..3635579(+) (pilR) [Acinetobacter pittii strain MCR53]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENGLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPAVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=908354 SOI71_RS17275 WP_104075791.1 3634167..3635579(+) (pilR) [Acinetobacter pittii strain MCR53]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTTCAACATGTTTCTCAAACTTACCCCCACACTCCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCTGGAGCTTTTGATTTTGTCAGCAAACC
AATTAACCAAATTCATTTAGATCAGTTGTTAAAAAAAGCGCTTAACCAGCCAAAACCAGAGCATGAGTTTGGTGAAACAA
CTCTAGAGAATGGCTTATTAATTGGGCGTTCACCACCTATACAAAACTTGCGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGTGAGTCTGGTACGGGCAAAGAAGTTGTTGCGAATCTTATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCGACTGAACTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGAGCGACTCAAGACAAACAAGGTCTTATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCGAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAGACTTA
CTTATTGCAGCAAGACTTCCCGGGTAACGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCGCCTCCTCTTAGAGGGAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGGCTGTTCAGACTCACCCAAAATTTCCAATGGAGGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCTCTGAACATGACGCATTGGAATCGAACTTTAGCGGCTAAAAAGTTAGGAATGACTTTCCGTTCTTTGC
GCTATCGACTCAAAAAATTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.047

100

0.866
  pilR Pseudomonas aeruginosa PAK

51.096

97.021

0.496