Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI71_RS09945 Genome accession   NZ_CP139251
Coordinates   2076800..2077180 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain MCR53     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2071800..2082180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS09915 (SOI71_09905) tadA 2071863..2072366 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  SOI71_RS09920 (SOI71_09910) hibch 2072372..2073496 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  SOI71_RS09925 (SOI71_09915) ung 2073493..2074206 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  SOI71_RS09930 (SOI71_09920) - 2074260..2074856 (-) 597 WP_017386831.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI71_RS09935 (SOI71_09925) gspK 2075085..2076044 (-) 960 WP_104074596.1 type II secretion system minor pseudopilin GspK -
  SOI71_RS09940 (SOI71_09930) xcpW 2076045..2076800 (-) 756 WP_104074597.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI71_RS09945 (SOI71_09935) xcpV 2076800..2077180 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI71_RS09950 (SOI71_09940) - 2077170..2077724 (-) 555 WP_104074598.1 type II secretion system protein -
  SOI71_RS09955 (SOI71_09945) - 2077731..2078339 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  SOI71_RS09960 (SOI71_09950) ycfH 2078376..2079149 (-) 774 WP_104074599.1 TatD family hydrolase -
  SOI71_RS09965 (SOI71_09955) pilZ 2079167..2079508 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  SOI71_RS09970 (SOI71_09960) holB 2079519..2080499 (-) 981 WP_068566161.1 DNA polymerase III subunit delta' -
  SOI71_RS09975 (SOI71_09965) kdsB 2080513..2081274 (-) 762 WP_068566158.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=908335 SOI71_RS09945 WP_002121425.1 2076800..2077180(-) (xcpV) [Acinetobacter pittii strain MCR53]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908335 SOI71_RS09945 WP_002121425.1 2076800..2077180(-) (xcpV) [Acinetobacter pittii strain MCR53]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACCAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAGAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937